Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4688 and Pf1N1B4_4689 are separated by 13 nucleotidesPf1N1B4_4689 and Pf1N1B4_4690 are separated by 221 nucleotidesPf1N1B4_4690 and Pf1N1B4_4691 overlap by 1 nucleotidesPf1N1B4_4691 and Pf1N1B4_4692 are separated by 454 nucleotides Pf1N1B4_4688 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 5,180,534 to 5,181,487 _4688 Pf1N1B4_4689 - hydrolase, alpha/beta fold family, at 5,181,501 to 5,182,544 _4689 Pf1N1B4_4690 - probable membrane protein YPO3302, at 5,182,766 to 5,183,200 _4690 Pf1N1B4_4691 - CopG protein, at 5,183,200 to 5,183,646 _4691 Pf1N1B4_4692 - hypothetical protein, at 5,184,101 to 5,184,631 _4692
Group Condition Pf1N1B4_4688 Pf1N1B4_4689 Pf1N1B4_4690 Pf1N1B4_4691 Pf1N1B4_4692
nitrogen source nitrogen source nitrite 0.1mM -0.5 +0.1 N.D. -0.8 -0.2
stress Dimethyl Sulfoxide 6.5 vol% -0.4 -0.2 N.D. -0.1 -0.6
temperature LB 37C -0.4 +0.1 N.D. -0.3 -0.8
stress Fusidic 0.125 mg/ml +0.5 -0.5 N.D. -0.9 -0.3
carbon source butyrate (C) -0.4 -0.4 N.D. +0.0 -0.4
stress methylglyoxal 0.008 vol% -0.4 -0.2 N.D. -0.3 -0.2
nitrogen source L-Isoleucine (N) +0.1 -0.5 N.D. -0.1 -0.4
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -0.0 -0.5 N.D. -0.4 +0.1
lb LB -0.4 +0.2 N.D. -0.2 -0.3
carbon source m-Inositol (C) +0.0 -0.4 N.D. +0.2 -0.5
carbon source L-Asparagine (C) -0.0 -0.2 N.D. +0.2 -0.6
carbon source carbon source Sucrose 1mM +0.3 -0.1 N.D. -0.6 -0.2
carbon source L-Valine (C) +0.3 -0.1 N.D. -0.2 -0.4
stress Chloride 200 mM -0.1 +0.2 N.D. -0.6 +0.1
carbon source carbon source Sucrose 5mM +0.2 -0.3 N.D. +0.2 -0.5
nitrogen source nitrogen source nitrite 0.5mM +0.2 +0.3 N.D. -0.3 -0.4
carbon source carbon source Sucrose 1mM -0.2 -0.0 N.D. +0.4 -0.5
pH Minimal media pH9 +0.3 +0.2 N.D. -0.2 -0.5
nitrogen source D-Glucosamine Hydrochloride (N) +0.5 -0.2 N.D. -0.2 -0.2
carbon source D,L-Lactate (C) -0.4 -0.1 N.D. +0.3 +0.2
carbon source carbon source Sucrose 0.25mM -0.4 -0.2 N.D. +0.4 +0.3
stress Chlorite 1 mM +0.5 -0.2 N.D. +0.2 -0.2
carbon source carbon source Sucrose 5mM +0.9 -0.2 N.D. -0.3 -0.0
pH Minimal media pH9 +0.1 +0.2 N.D. +0.6 -0.3
stress Doxycycline hyclate 0.0001 mg/ml +0.6 -0.3 N.D. +0.3 +0.1
carbon source a-Ketoglutaric (C) +0.2 +0.4 N.D. -0.1 +0.4
carbon source D-Fructose (C) -0.1 +0.1 N.D. +0.3 +0.6
stress copper (II) chloride 2.5 mM -0.0 +0.3 N.D. +0.0 +0.7
nitrogen source Cytidine (N) +0.1 +0.4 N.D. +0.3 +0.3
stress nitrite 10 mM +0.6 +0.2 N.D. +0.3 +0.3
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