Private Fitness
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 30 experiments (either direction), sorted by average fitness
Or view
all 191 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
Pf1N1B4_4647 and Pf1N1B4_4648 are separated by 228 nucleotides
Pf1N1B4_4648 and Pf1N1B4_4649 are separated by 428 nucleotides
Pf1N1B4_4649 and Pf1N1B4_4650 are separated by 159 nucleotides
Pf1N1B4_4650 and Pf1N1B4_4651 are separated by 92 nucleotides
Pf1N1B4_4647 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 5,126,807 to 5,127,247
_4647
Pf1N1B4_4648 - transcriptional regulator, MerR family, at 5,127,476 to 5,128,453
_4648
Pf1N1B4_4649 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 5,128,882 to 5,129,391
_4649
Pf1N1B4_4650 - Aspartate racemase (EC 5.1.1.13), at 5,129,551 to 5,130,243
_4650
Pf1N1B4_4651 - Transcriptional regulator, AraC family, at 5,130,336 to 5,131,112
_4651
Group
Condition
Pf1N1B4
_4647
Pf1N1B4
_4648
Pf1N1B4
_4649
Pf1N1B4
_4650
Pf1N1B4
_4651
carbon source
D-Glucose (C)
N.D.
-1.2
N.D.
-0.3
-0.3
nitrogen source
nitrate (N)
N.D.
-1.0
N.D.
-0.4
-0.3
stress
sodium fluoride 12.5 mM
N.D.
-1.4
N.D.
+0.0
-0.2
denitrifying
Nitrate reduction, replicate B t2
N.D.
-0.4
N.D.
-0.2
-0.7
carbon source
D-Fructose (C)
N.D.
-1.6
N.D.
+0.3
+0.3
carbon source
carbon source Sucrose 0.25mM
N.D.
-0.5
N.D.
+0.3
-0.7
nitrogen source
nitrogen source Ammonium chloride 20mM
N.D.
-0.3
N.D.
+0.3
-0.7
nitrogen source
L-Methionine (N)
N.D.
-1.1
N.D.
-0.1
+0.5
carbon source
carbon source Sucrose 1mM
N.D.
+0.1
N.D.
+0.5
-0.9
carbon source
carbon source Sucrose 5mM
N.D.
+0.9
N.D.
-0.2
-0.2
stress
Nalidixic 0.004 mg/ml
N.D.
-0.3
N.D.
+1.0
-0.1
stress
Cisplatin 0.006 mg/ml
N.D.
+0.3
N.D.
+0.7
-0.3
stress
acetate 20 mM
N.D.
+0.7
N.D.
+0.4
-0.4
carbon source
carbon source Sucrose 1mM
N.D.
+1.2
N.D.
-0.3
-0.1
stress
Cholin acetate 20 mM
N.D.
+0.6
N.D.
+0.6
-0.3
carbon source
octanoate (C)
N.D.
+0.6
N.D.
+0.8
-0.5
stress
Cholin acetate 10 mM
N.D.
+0.9
N.D.
+0.3
-0.1
nitrogen source
Carnitine Hydrochloride (N)
N.D.
+0.3
N.D.
+1.0
-0.1
lb
LB
N.D.
+0.8
N.D.
+0.3
+0.2
stress
Tetracycline 0.0004 mg/ml
N.D.
+0.9
N.D.
+0.3
+0.1
nitrogen source
D-Alanine (N)
N.D.
+0.6
N.D.
+0.7
+0.0
lb
LB
N.D.
+0.8
N.D.
+0.3
+0.3
temperature
LB 37C
N.D.
+0.8
N.D.
+0.4
+0.2
carbon source
L-Glutamine (C)
N.D.
+0.8
N.D.
+0.6
+0.0
stress
Chloride 300 mM
N.D.
+1.2
N.D.
+0.3
-0.1
stress
5-Hydroxymethylfurfural 2.5 mM
N.D.
+0.9
N.D.
+0.7
-0.0
carbon source
L-Glutamic (C)
N.D.
+1.0
N.D.
+0.5
+0.1
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
N.D.
+0.9
N.D.
+0.8
-0.1
stress
Sisomicin 0.001 mg/ml
N.D.
+1.1
N.D.
+0.8
+0.1
stress
methylglyoxal 0.008 vol%
N.D.
+1.2
N.D.
+1.0
+0.2
remove
Pf1N1B4_4647
plot
remove
Pf1N1B4_4648
plot
remove
Pf1N1B4_4649
remove
Pf1N1B4_4650
plot
remove
Pf1N1B4_4651
plot