Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4641 and Pf1N1B4_4642 are separated by 186 nucleotidesPf1N1B4_4642 and Pf1N1B4_4643 are separated by 203 nucleotidesPf1N1B4_4643 and Pf1N1B4_4644 are separated by 370 nucleotidesPf1N1B4_4644 and Pf1N1B4_4645 are separated by 245 nucleotides Pf1N1B4_4641 - FIG00954580: hypothetical protein, at 5,118,110 to 5,118,463 _4641 Pf1N1B4_4642 - hypothetical protein, at 5,118,650 to 5,118,763 _4642 Pf1N1B4_4643 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form, at 5,118,967 to 5,123,874 _4643 Pf1N1B4_4644 - hypothetical protein, at 5,124,245 to 5,124,505 _4644 Pf1N1B4_4645 - FIG00954888: hypothetical protein, at 5,124,751 to 5,125,044 _4645
Group Condition Pf1N1B4_4641 Pf1N1B4_4642 Pf1N1B4_4643 Pf1N1B4_4644 Pf1N1B4_4645
carbon source L-Arginine (C) N.D. N.D. -2.8 -0.1 N.D.
carbon source L-Citrulline (C) N.D. N.D. -2.3 -0.3 N.D.
carbon source octanoate (C) N.D. N.D. -2.4 +0.0 N.D.
anaerobic N2E2wt with N1B4m denitrifying repA N.D. N.D. +0.0 -2.0 N.D.
carbon source L-Valine (C) N.D. N.D. -1.3 -0.4 N.D.
carbon source L-Leucine (C) N.D. N.D. -1.9 +0.2 N.D.
stress Fusidic 0.125 mg/ml N.D. N.D. -0.2 -1.5 N.D.
stress Carbenicillin 2 mg/ml N.D. N.D. -0.9 -0.3 N.D.
stress nitrite 10 mM N.D. N.D. -0.3 -0.9 N.D.
carbon source carbon source Sucrose 1mM N.D. N.D. +0.0 -1.2 N.D.
carbon source L-Glutamine (C) N.D. N.D. -0.6 -0.6 N.D.
stress Rifampicin 0.004 mg/ml N.D. N.D. -1.3 +0.1 N.D.
stress 5-Hydroxymethylfurfural 2.5 mM N.D. N.D. -0.2 -0.9 N.D.
stress Fusidic 0.0625 mg/ml N.D. N.D. -0.2 -0.8 N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 N.D. N.D. -0.1 -0.9 N.D.
stress Benzethonium chloride 0.0125 mM N.D. N.D. -0.6 -0.4 N.D.
stress Choline chloride 200 mM N.D. N.D. +0.2 -0.8 N.D.
stress Sisomicin 0.001 mg/ml N.D. N.D. +0.6 -1.0 N.D.
stress 1-ethyl-3-methylimidazolium lysine 5 mM N.D. N.D. +0.4 -0.7 N.D.
lb LB N.D. N.D. +0.3 -0.6 N.D.
stress methylglyoxal 0.004 vol% N.D. N.D. +0.4 -0.6 N.D.
stress Gentamicin 0.001 mg/ml N.D. N.D. +0.6 -0.7 N.D.
stress Choline Lysine 6 mM N.D. N.D. +0.6 -0.6 N.D.
stress methylglyoxal 0.008 vol% N.D. N.D. +0.9 -0.7 N.D.
stress 1-ethyl-3-methylimidazolium chloride 80 mM N.D. N.D. +0.6 -0.3 N.D.
temperature LB 37C N.D. N.D. +0.8 -0.4 N.D.
pH Minimal media pH9 N.D. N.D. -0.3 +0.9 N.D.
temperature LB 37C N.D. N.D. +0.9 +0.1 N.D.
anaerobic Nitrate reduction N.D. N.D. +0.6 +0.4 N.D.
carbon source carbon source Sucrose 5mM N.D. N.D. +0.3 +1.3 N.D.
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