Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4593 and Pf1N1B4_4594 overlap by 4 nucleotidesPf1N1B4_4594 and Pf1N1B4_4595 are separated by 282 nucleotidesPf1N1B4_4595 and Pf1N1B4_4596 are separated by 99 nucleotidesPf1N1B4_4596 and Pf1N1B4_4597 are separated by 65 nucleotides Pf1N1B4_4593 - ABC transporter, periplasmic substrate-binding protein, at 5,064,001 to 5,065,842 _4593 Pf1N1B4_4594 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 5,065,839 to 5,067,671 _4594 Pf1N1B4_4595 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 5,067,954 to 5,069,408 _4595 Pf1N1B4_4596 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 5,069,508 to 5,070,275 _4596 Pf1N1B4_4597 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 5,070,341 to 5,071,099 _4597
Group Condition Pf1N1B4_4593 Pf1N1B4_4594 Pf1N1B4_4595 Pf1N1B4_4596 Pf1N1B4_4597
carbon source D-Galactose (C) -0.5 -1.1 N.D. -0.6 N.D.
pH Minimal media pH9 -1.1 -0.6 N.D. -0.4 N.D.
nitrogen source nitrogen source nitrate 20mM -0.9 +0.3 N.D. -1.5 N.D.
stress copper (II) chloride 2.5 mM -0.5 -0.9 N.D. -0.7 N.D.
denitrifying Nitrate reduction, replicate A t2 -0.5 -0.8 N.D. -0.7 N.D.
carbon source L-Lactate (C) -0.1 -0.4 N.D. -1.4 N.D.
carbon source D-Glucose (C) -0.5 -1.1 N.D. -0.4 N.D.
stress Bacitracin 2 mg/ml -0.5 -0.4 N.D. -1.1 N.D.
carbon source m-Inositol (C) -0.8 -0.2 N.D. -0.9 N.D.
pH Minimal media pH9 -1.6 +0.1 N.D. -0.3 N.D.
carbon source D-Galactose (C) -0.7 -0.5 N.D. -0.5 N.D.
carbon source carbon source Sucrose 0.25mM -0.1 -1.8 N.D. +0.1 N.D.
nitrogen source D-Glucosamine Hydrochloride (N) -0.7 -0.7 N.D. -0.3 N.D.
carbon source L-Histidine (C) -0.4 -0.7 N.D. -0.6 N.D.
stress methylglyoxal 0.008 vol% +0.3 -0.6 N.D. -1.2 N.D.
temperature LB 37C -0.4 -1.6 N.D. +0.6 N.D.
carbon source L-Arginine (C) +0.2 -0.6 N.D. -1.0 N.D.
nitrogen source nitrogen source nitrite 0.1mM -0.5 +0.2 N.D. -1.0 N.D.
nitrogen source L-Methionine (N) +0.5 -0.2 N.D. -1.4 N.D.
nitrogen source nitrogen source nitrate 20mM -0.5 +0.5 N.D. -1.0 N.D.
stress methylglyoxal 0.004 vol% +0.1 +0.7 N.D. -1.7 N.D.
stress Choline chloride 200 mM -0.5 -0.9 N.D. +0.6 N.D.
carbon source carbon source Sucrose 1mM -1.3 +0.6 N.D. +0.1 N.D.
nitrogen source Thymine (N) -0.3 +0.6 N.D. -0.8 N.D.
lb LB +0.2 -1.1 N.D. +0.5 N.D.
anaerobic Nitrate reduction -0.5 -0.5 N.D. +0.8 N.D.
stress Fusidic 0.0625 mg/ml +0.5 +0.5 N.D. -0.7 N.D.
denitrifying Nitrate reduction, replicate C t1 +0.4 -0.6 N.D. +0.8 N.D.
carbon source carbon source Sucrose 0.25mM +0.1 +1.1 N.D. -0.6 N.D.
denitrifying Nitrate reduction, replicate C t3 +0.5 -0.2 N.D. +1.1 N.D.
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