Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_43 and Pf1N1B4_44 are separated by 145 nucleotidesPf1N1B4_44 and Pf1N1B4_45 are separated by 10 nucleotidesPf1N1B4_45 and Pf1N1B4_46 are separated by 55 nucleotidesPf1N1B4_46 and Pf1N1B4_47 are separated by 3 nucleotides Pf1N1B4_43 - hypothetical protein, at 50,934 to 51,638 _43 Pf1N1B4_44 - Multicopper oxidase, at 51,784 to 53,577 _44 Pf1N1B4_45 - Copper resistance protein B, at 53,588 to 54,478 _45 Pf1N1B4_46 - Copper resistance protein C precursor, at 54,534 to 54,917 _46 Pf1N1B4_47 - Copper resistance protein D, at 54,921 to 55,850 _47
Group Condition Pf1N1B4_43 Pf1N1B4_44 Pf1N1B4_45 Pf1N1B4_46 Pf1N1B4_47
stress copper (II) chloride 2.5 mM +0.1 -1.2 -0.7 -0.2 -0.0
stress copper (II) chloride 2.5 mM +0.3 -1.1 -1.0 -0.1 -0.1
anaerobic N2E2wt with N1B4m denitrifying repB -0.4 -0.1 +0.0 -0.8 -0.6
stress Carbenicillin 2 mg/ml -1.6 -0.2 +0.2 +0.5 -0.1
temperature LB 37C +0.1 -0.6 -0.7 -0.1 +0.3
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.1 -0.3 +0.3 -0.3 -0.8
denitrifying Nitrate reduction, replicate B t1 -0.6 +0.2 +0.2 -0.0 -0.7
carbon source carbon source Sucrose 1mM +0.5 -0.3 -0.0 -0.1 -1.0
denitrifying Nitrate reduction, replicate B t2 -0.5 +0.1 +0.3 -0.1 -0.7
denitrifying Nitrate reduction, replicate B -0.5 -0.1 -0.3 -0.3 +0.5
stress Chloride 200 mM +0.4 +0.2 +0.3 -0.8 -0.1
pH Minimal media pH9 +0.4 -0.1 -1.1 +0.4 +0.4
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 -0.4 -0.1 +0.1 +0.8 -0.5
nitrogen source nitrogen source nitrite 1mM +0.1 +0.3 +0.1 -1.0 +0.6
denitrifying Nitrate reduction, replicate C t3 -0.7 -0.1 -0.1 +0.2 +0.9
carbon source L-Valine (C) +0.5 -0.0 -0.2 +0.5 -0.4
stress Fusidic 0.125 mg/ml +0.9 +0.0 -0.2 -0.5 +0.0
denitrifying Nitrate reduction, replicate C t1 -0.5 +0.1 -0.2 +0.6 +0.5
denitrifying Nitrate reduction, replicate A t2 -0.4 +0.2 +0.4 -0.4 +0.4
pH Minimal media pH9 +0.4 -0.1 -0.9 +0.3 +0.6
stress 1-ethyl-3-methylimidazolium chloride 80 mM +0.6 +0.2 -0.1 -0.6 +0.5
stress Cisplatin 0.006 mg/ml +0.8 -0.3 -0.1 +0.7 -0.2
denitrifying Nitrate reduction, replicate C t2 -0.7 +0.2 +0.2 +0.4 +0.7
nitrogen source D-Glucosamine Hydrochloride (N) +0.8 +0.3 -0.5 +0.1 +0.2
denitrifying Nitrate reduction, replicate A t1 -0.3 +0.3 +0.2 +0.1 +0.8
stress Cisplatin 0.006 mg/ml +1.0 +0.1 -0.1 +0.3 -0.1
nitrogen source Cytidine (N) +0.4 +0.2 -0.3 +0.6 +0.3
stress Sisomicin 0.001 mg/ml +0.6 +0.3 -0.0 +0.1 +0.8
nitrogen source Adenine (N) -0.0 +0.8 +0.3 +0.6 +0.3
nitrogen source Uridine (N) -0.4 +0.8 +0.6 +0.6 +0.4
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