Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4325 and Pf1N1B4_4326 are separated by 4 nucleotidesPf1N1B4_4326 and Pf1N1B4_4327 overlap by 29 nucleotidesPf1N1B4_4327 and Pf1N1B4_4328 are separated by 26 nucleotidesPf1N1B4_4328 and Pf1N1B4_4329 are separated by 267 nucleotides Pf1N1B4_4325 - Agmatine deiminase (EC 3.5.3.12), at 4,785,715 to 4,786,767 _4325 Pf1N1B4_4326 - N-carbamoylputrescine amidase (3.5.1.53), at 4,786,772 to 4,787,680 _4326 Pf1N1B4_4327 - Spermidine/putrescine-binding periplasmic protein, at 4,787,652 to 4,788,785 _4327 Pf1N1B4_4328 - Agmatine deiminase (EC 3.5.3.12), at 4,788,812 to 4,789,936 _4328 Pf1N1B4_4329 - Acyl dehydratase, at 4,790,204 to 4,790,689 _4329
Group Condition Pf1N1B4_4325 Pf1N1B4_4326 Pf1N1B4_4327 Pf1N1B4_4328 Pf1N1B4_4329
carbon source carbon source Sucrose 1mM -0.1 -2.4 -0.3 -0.5 N.D.
carbon source carbon source Sucrose 0.25mM -0.7 -1.3 -0.1 -0.6 N.D.
stress Rifampicin 0.004 mg/ml -0.6 -1.2 -0.5 +0.0 N.D.
stress Cisplatin 0.006 mg/ml -0.2 -0.5 -0.7 -0.4 N.D.
carbon source carbon source Sucrose 1mM +0.0 -0.4 -0.3 -1.0 N.D.
carbon source D-Fructose (C) -0.5 +0.1 -0.4 -0.8 N.D.
stress Thallium(I) acetate 0.008 mg/ml -0.5 -0.1 -0.3 -0.5 N.D.
nitrogen source Uridine (N) -0.2 -0.6 -0.5 +0.3 N.D.
carbon source Carnitine Hydrochloride (C) +0.2 -0.4 -0.4 -0.4 N.D.
nitrogen source nitrogen source nitrate 20mM -0.3 -0.6 +0.2 -0.3 N.D.
carbon source D-Glucose (C) -0.2 -0.7 -0.4 +0.4 N.D.
nitrogen source Cytosine (N) +0.2 -0.8 -0.4 +0.1 N.D.
denitrifying Nitrate reduction, replicate C +0.2 +0.1 -0.4 -0.7 N.D.
carbon source carbon source Sucrose 0.5mM -0.4 +0.5 -0.0 -0.8 N.D.
stress Carbenicillin 2 mg/ml -0.3 +0.4 +0.0 -0.9 N.D.
stress sodium fluoride 12.5 mM +0.4 -0.6 -0.2 -0.1 N.D.
stress Aluminum chloride 2.5 mM -0.5 +0.4 -0.0 -0.4 N.D.
temperature LB 37C +0.4 -0.2 -1.0 +0.2 N.D.
carbon source carbon source Sucrose 5mM -0.2 +0.6 -0.2 -0.7 N.D.
nophagecontrol Time16-nophage +0.2 +0.4 -0.4 -0.6 N.D.
stress Chlorite 1 mM +0.3 -0.6 -0.1 +0.6 N.D.
stress Choline Lysine 6 mM -0.8 +0.8 +0.1 +0.4 N.D.
stress Chloride 200 mM -0.4 +0.8 +0.1 +0.0 N.D.
stress Fusidic 0.125 mg/ml -0.8 +0.9 +0.1 +0.4 N.D.
nitrogen source Cytidine (N) +0.2 -0.4 +0.3 +0.7 N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -0.4 +0.8 +0.1 +0.5 N.D.
stress Benzethonium chloride 0.0125 mM +0.5 +0.6 -0.5 +0.3 N.D.
carbon source carbon source Sucrose 0.25mM +0.7 -0.2 +0.3 +0.4 N.D.
stress Doxycycline hyclate 0.0001 mg/ml +0.6 +0.2 +0.0 +0.6 N.D.
stress Fusidic 0.0625 mg/ml +0.3 +0.7 +0.3 +0.4 N.D.
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