Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4317 and Pf1N1B4_4318 are separated by 147 nucleotidesPf1N1B4_4318 and Pf1N1B4_4319 are separated by 576 nucleotidesPf1N1B4_4319 and Pf1N1B4_4320 overlap by 4 nucleotidesPf1N1B4_4320 and Pf1N1B4_4321 overlap by 7 nucleotides Pf1N1B4_4317 - DNA/RNA non-specific endonuclease, at 4,778,421 to 4,779,251 _4317 Pf1N1B4_4318 - hypothetical protein, at 4,779,399 to 4,780,760 _4318 Pf1N1B4_4319 - Phosphonate ABC transporter permease protein phnE1 (TC 3.A.1.9.1), at 4,781,337 to 4,782,104 _4319 Pf1N1B4_4320 - Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1), at 4,782,101 to 4,782,928 _4320 Pf1N1B4_4321 - Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1), at 4,782,922 to 4,783,719 _4321
Group Condition Pf1N1B4_4317 Pf1N1B4_4318 Pf1N1B4_4319 Pf1N1B4_4320 Pf1N1B4_4321
carbon source carbon source Sucrose 1mM +0.2 -1.1 +0.3 -2.6 N.D.
anaerobic Nitrate reduction -1.9 -1.1 -0.1 +0.2 N.D.
carbon source Carnitine Hydrochloride (C) -0.6 -1.3 +0.2 -1.3 N.D.
phagefrs Time6-FRS -0.9 -1.0 -0.0 -0.7 N.D.
anaerobic Nitrate reduction -1.9 -1.9 +0.9 +0.5 N.D.
stress Cephalothin 2.5 mg/ml -1.4 -0.2 -0.1 -0.8 N.D.
stress Spectinomycin 0.05 mg/ml +0.1 -1.1 -0.6 -0.8 N.D.
stress Rifampicin 0.004 mg/ml -0.6 -1.4 +0.2 -0.4 N.D.
carbon source L-Alanine (C) -0.6 -0.7 +0.2 -0.8 N.D.
carbon source carbon source Sucrose 5mM -0.1 +0.8 +0.3 -2.9 N.D.
anaerobic N2E2wt with N1B4m denitrifying repA -0.6 -0.9 -0.7 +0.4 N.D.
stress sodium fluoride 12.5 mM -1.1 -0.5 +0.3 -0.3 N.D.
carbon source carbon source Sucrose 1mM -2.1 +0.8 -0.1 -0.2 N.D.
carbon source L-Asparagine (C) +0.3 -1.5 +0.1 -0.5 N.D.
anaerobic Nitrate reduction -1.3 -0.8 +0.2 +0.3 N.D.
stress Dimethyl Sulfoxide 6.5 vol% +0.4 -0.5 +0.2 -1.7 N.D.
temperature LB 37C -1.0 +1.3 -1.3 -0.5 N.D.
carbon source octanoate (C) +0.5 -0.8 +0.2 -1.1 N.D.
nitrogen source L-Methionine (N) +0.3 -0.8 -1.0 +0.3 N.D.
carbon source D-Fructose (C) -1.1 +0.4 +0.2 -0.6 N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -2.1 -0.1 +0.3 +0.8 N.D.
carbon source L-Citrulline (C) +0.6 -0.8 +0.1 -0.7 N.D.
denitrifying Nitrate reduction, replicate C -0.7 -0.6 -0.3 +0.7 N.D.
nitrogen source nitrogen source nitrite 0.1mM -0.7 +0.2 -0.8 +0.8 N.D.
carbon source carbon source Sucrose 0.5mM +0.0 -0.7 -0.4 +1.4 N.D.
temperature LB 37C -0.8 -0.0 +0.7 +0.8 N.D.
nitrogen source Uridine (N) +1.2 -0.6 +0.4 -0.3 N.D.
pH Minimal media pH9 +0.6 -0.8 +0.6 +1.0 N.D.
nitrogen source nitrate (N) +1.7 +0.3 +0.3 -0.2 N.D.
carbon source carbon source Sucrose 0.25mM +0.3 +0.7 +0.5 +0.7 N.D.
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