Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_41 and Pf1N1B4_42 overlap by 4 nucleotidesPf1N1B4_42 and Pf1N1B4_43 are separated by 327 nucleotidesPf1N1B4_43 and Pf1N1B4_44 are separated by 145 nucleotidesPf1N1B4_44 and Pf1N1B4_45 are separated by 10 nucleotides Pf1N1B4_41 - hypothetical protein, at 48,622 to 49,104 _41 Pf1N1B4_42 - hypothetical protein, at 49,101 to 50,606 _42 Pf1N1B4_43 - hypothetical protein, at 50,934 to 51,638 _43 Pf1N1B4_44 - Multicopper oxidase, at 51,784 to 53,577 _44 Pf1N1B4_45 - Copper resistance protein B, at 53,588 to 54,478 _45
Group Condition Pf1N1B4_41 Pf1N1B4_42 Pf1N1B4_43 Pf1N1B4_44 Pf1N1B4_45
stress copper (II) chloride 2.5 mM +0.0 -0.3 +0.1 -1.2 -0.7
carbon source carbon source Sucrose 5mM -1.1 -0.2 -0.5 -0.2 -0.1
pH Minimal media pH9 -0.8 -0.4 +0.4 -0.1 -1.1
stress copper (II) chloride 2.5 mM +0.0 -0.0 +0.3 -1.1 -1.0
temperature LB 37C -0.3 -0.0 +0.1 -0.6 -0.7
stress Carbenicillin 2 mg/ml +0.3 -0.0 -1.6 -0.2 +0.2
anaerobic N2E2wt with N1B4m denitrifying repA -1.0 -0.3 +0.0 +0.1 -0.1
nitrogen source D-Glucosamine Hydrochloride (N) -0.3 -0.7 +0.8 +0.3 -0.5
stress Cisplatin 0.006 mg/ml -0.7 +0.0 +0.8 -0.3 -0.1
carbon source octanoate (C) +0.7 -0.5 -0.2 -0.1 -0.3
carbon source carbon source Sucrose 0.25mM -0.9 -0.3 +0.7 +0.3 -0.0
pH Minimal media pH9 +0.8 -0.4 +0.4 -0.1 -0.9
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.5 -0.7 +0.1 -0.3 +0.3
carbon source L-Leucine (C) +0.5 -0.3 +0.3 +0.3 -0.4
nitrogen source Adenine (N) -0.4 -0.2 -0.0 +0.8 +0.3
carbon source Cytidine (C) +0.7 -0.4 +0.4 -0.1 -0.0
nitrogen source Uridine (N) -0.6 +0.2 -0.4 +0.8 +0.6
stress 1-ethyl-3-methylimidazolium chloride 80 mM -0.4 +0.4 +0.6 +0.2 -0.1
nitrogen source D-Alanine (N) +0.7 -0.2 +0.6 +0.1 -0.4
carbon source Putrescine (C) +0.8 -0.1 +0.4 +0.1 -0.2
temperature LB 37C +0.8 -0.3 +0.3 -0.1 +0.1
carbon source carbon source Sucrose 0.25mM -0.4 +0.2 +0.6 +0.3 +0.3
nitrogen source nitrogen source nitrate 20mM +0.9 +0.0 -0.3 +0.0 +0.4
carbon source L-Valine (C) +0.9 -0.1 +0.5 -0.0 -0.2
stress Cisplatin 0.006 mg/ml +0.3 -0.1 +1.0 +0.1 -0.1
stress Doxycycline hyclate 0.0001 mg/ml +0.8 +0.2 +0.5 +0.0 -0.2
carbon source carbon source Sucrose 0.5mM -0.2 +0.5 +0.6 +0.2 +0.3
stress Fusidic 0.125 mg/ml +0.8 -0.1 +0.9 +0.0 -0.2
stress acetate 20 mM +0.7 +0.1 +0.3 +0.1 +0.3
carbon source carbon source Sucrose 1mM +1.2 -0.3 +0.8 +0.3 +0.2
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