Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4232 and Pf1N1B4_4233 are separated by 208 nucleotidesPf1N1B4_4233 and Pf1N1B4_4234 are separated by 188 nucleotidesPf1N1B4_4234 and Pf1N1B4_4235 are separated by 83 nucleotidesPf1N1B4_4235 and Pf1N1B4_4236 are separated by 29 nucleotides Pf1N1B4_4232 - FIG00958400: hypothetical protein, at 4,691,064 to 4,691,246 _4232 Pf1N1B4_4233 - Transcriptional regulator, LysR family, at 4,691,455 to 4,692,348 _4233 Pf1N1B4_4234 - putative transport protein, at 4,692,537 to 4,693,898 _4234 Pf1N1B4_4235 - Quinone oxidoreductase (EC 1.6.5.5), at 4,693,982 to 4,694,956 _4235 Pf1N1B4_4236 - Transcriptional regulator, LysR family, at 4,694,986 to 4,695,915 _4236
Group Condition Pf1N1B4_4232 Pf1N1B4_4233 Pf1N1B4_4234 Pf1N1B4_4235 Pf1N1B4_4236
carbon source carbon source Sucrose 5mM N.D. N.D. -1.3 -0.6 -0.1
denitrifying Nitrate reduction, replicate A t1 N.D. N.D. -1.0 -0.6 -0.1
stress Cisplatin 0.006 mg/ml N.D. N.D. -0.5 -0.9 -0.1
carbon source L-Glutamine (C) N.D. N.D. +0.1 -1.1 -0.3
nitrogen source nitrogen source nitrate 20mM N.D. N.D. -0.2 -1.0 -0.0
stress Cephalothin 2.5 mg/ml N.D. N.D. -0.4 -0.7 -0.2
carbon source carbon source Sucrose 5mM N.D. N.D. -0.7 +0.1 -0.7
anaerobic N2E2wt with N1B4m denitrifying repA N.D. N.D. -0.1 -1.2 +0.1
carbon source carbon source Sucrose 0.25mM N.D. N.D. -0.9 +0.1 -0.4
denitrifying Nitrate reduction, replicate A t2 N.D. N.D. -0.9 -0.1 -0.1
nitrogen source nitrogen source nitrate 20mM N.D. N.D. -1.1 +0.1 -0.1
stress D-Cycloserine 0.1 mg/ml N.D. N.D. -0.9 +0.1 -0.2
temperature LB 37C N.D. N.D. +0.4 -1.1 -0.3
carbon source L-Histidine (C) N.D. N.D. -0.6 +0.2 -0.4
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 N.D. N.D. +0.2 -0.8 -0.2
stress Chloride 300 mM N.D. N.D. -0.5 -0.3 +0.2
anaerobic N2E2wt with N1B4m denitrifying repB N.D. N.D. -0.7 +0.4 -0.2
stress Gentamicin 0.001 mg/ml N.D. N.D. +0.4 -0.7 -0.0
carbon source D-Lactate (C) N.D. N.D. +0.5 -0.7 +0.3
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B N.D. N.D. -0.5 +0.2 +0.4
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 N.D. N.D. +0.5 -0.5 +0.2
nitrogen source Cytidine (N) N.D. N.D. -0.2 +0.8 -0.2
carbon source Carnitine Hydrochloride (C) N.D. N.D. -0.3 +0.6 +0.3
stress Fusidic 0.125 mg/ml N.D. N.D. +0.3 +0.9 -0.4
carbon source L-Arabinose (C) N.D. N.D. +0.5 +0.6 -0.2
stress Dimethyl Sulfoxide 5 vol% N.D. N.D. +0.4 +0.6 -0.1
stress Choline Lysine 6 mM N.D. N.D. +0.3 +0.7 -0.0
anaerobic Nitrate reduction N.D. N.D. +0.3 +0.8 -0.0
denitrifying Nitrate reduction, replicate C N.D. N.D. +1.0 -0.1 +0.3
temperature LB 37C N.D. N.D. +0.3 +0.4 +0.7
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