Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4192 and Pf1N1B4_4193 are separated by 47 nucleotidesPf1N1B4_4193 and Pf1N1B4_4194 are separated by 52 nucleotidesPf1N1B4_4194 and Pf1N1B4_4195 are separated by 146 nucleotidesPf1N1B4_4195 and Pf1N1B4_4196 overlap by 37 nucleotides Pf1N1B4_4192 - Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase, at 4,644,910 to 4,645,776 _4192 Pf1N1B4_4193 - Oxidoreductase, short chain dehydrogenase/reductase family, at 4,645,824 to 4,646,612 _4193 Pf1N1B4_4194 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 4,646,665 to 4,647,786 _4194 Pf1N1B4_4195 - Transcriptional regulator, TetR family, at 4,647,933 to 4,648,505 _4195 Pf1N1B4_4196 - hypothetical protein, at 4,648,469 to 4,648,630 _4196
Group Condition Pf1N1B4_4192 Pf1N1B4_4193 Pf1N1B4_4194 Pf1N1B4_4195 Pf1N1B4_4196
carbon source octanoate (C) -0.6 -0.1 -0.4 -1.8 N.D.
carbon source carbon source Sucrose 1mM -1.2 +0.2 -0.9 -0.8 N.D.
carbon source carbon source Sucrose 5mM -1.3 +0.1 -1.0 -0.3 N.D.
carbon source carbon source Sucrose 0.25mM -0.3 -0.8 -1.0 -0.3 N.D.
nitrogen source Carnitine Hydrochloride (N) -0.7 -0.1 -0.2 -1.2 N.D.
nitrogen source D-Alanine (N) -0.8 -0.3 +0.1 -1.1 N.D.
carbon source L-Glutamic (C) -0.2 -0.0 -0.7 -1.1 N.D.
carbon source L-Arginine (C) -0.4 +0.1 -0.7 -0.8 N.D.
nitrogen source L-Valine (N) -0.3 -0.0 -0.5 -1.0 N.D.
stress Cisplatin 0.006 mg/ml +0.1 -0.9 -0.1 -0.9 N.D.
carbon source D-Galacturonic Acid (C) -0.3 -0.5 -0.2 -0.8 N.D.
carbon source carbon source Sucrose 1mM -1.0 -0.9 +0.1 +0.2 N.D.
nitrogen source L-Isoleucine (N) -0.3 -0.0 +0.2 -1.2 N.D.
stress Thallium(I) acetate 0.008 mg/ml +1.0 -0.8 -0.9 -0.5 N.D.
carbon source m-Inositol (C) -0.6 +0.3 -0.2 -0.7 N.D.
nitrogen source nitrogen source nitrate 5mM -1.0 +0.3 +0.1 -0.5 N.D.
carbon source carbon source Sucrose 0.5mM -0.9 -0.3 +0.6 -0.5 N.D.
nitrogen source Putrescine (N) -0.9 +0.3 +0.3 -0.7 N.D.
stress Doxycycline hyclate 0.0001 mg/ml -0.3 +0.5 -0.6 -0.7 N.D.
denitrifying Nitrate reduction, replicate B -0.6 -0.7 +0.0 +0.4 N.D.
carbon source D-Alanine (C) -0.3 +0.5 -0.5 -0.6 N.D.
pH Minimal media pH9 +0.1 -0.7 -0.6 +0.5 N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -0.4 -0.1 +0.7 -0.8 N.D.
lb LB +0.7 -0.8 -0.2 -0.1 N.D.
denitrifying Nitrate reduction, replicate C t2 -0.2 +0.8 -0.4 -0.6 N.D.
temperature LB 37C +1.1 -0.0 -1.8 +1.0 N.D.
stress Choline chloride 200 mM +0.2 -0.3 -0.4 +0.9 N.D.
pH Minimal media pH9 +0.7 -0.5 -0.4 +0.8 N.D.
stress Sisomicin 0.001 mg/ml +0.5 -0.5 +0.0 +0.8 N.D.
stress Choline Lysine 6 mM +0.4 +0.1 +0.4 +1.1 N.D.
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