Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4091 and Pf1N1B4_4092 are separated by 196 nucleotidesPf1N1B4_4092 and Pf1N1B4_4093 are separated by 159 nucleotidesPf1N1B4_4093 and Pf1N1B4_4094 are separated by 225 nucleotidesPf1N1B4_4094 and Pf1N1B4_4095 are separated by 10 nucleotides Pf1N1B4_4091 - Probable signal peptide protein, at 4,539,825 to 4,540,565 _4091 Pf1N1B4_4092 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 4,540,762 to 4,542,174 _4092 Pf1N1B4_4093 - Alkyl hydroperoxide reductase subunit C-like protein, at 4,542,334 to 4,542,987 _4093 Pf1N1B4_4094 - Uncharacterized conserved protein, at 4,543,213 to 4,543,710 _4094 Pf1N1B4_4095 - Transcriptional regulator, LacI family, at 4,543,721 to 4,544,722 _4095
Group Condition Pf1N1B4_4091 Pf1N1B4_4092 Pf1N1B4_4093 Pf1N1B4_4094 Pf1N1B4_4095
carbon source carbon source Sucrose 0.5mM -1.2 -0.5 N.D. N.D. N.D.
carbon source carbon source Sucrose 0.25mM -0.9 -0.7 N.D. N.D. N.D.
temperature LB 37C -0.8 -0.5 N.D. N.D. N.D.
temperature LB 37C -1.4 +0.1 N.D. N.D. N.D.
carbon source carbon source Sucrose 0.25mM -0.6 -0.5 N.D. N.D. N.D.
stress Rifampicin 0.004 mg/ml -0.3 -0.4 N.D. N.D. N.D.
anaerobic N2E2wt with N1B4m denitrifying repA -0.7 +0.0 N.D. N.D. N.D.
nitrogen source nitrate (N) +0.3 -0.4 N.D. N.D. N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -0.6 +0.5 N.D. N.D. N.D.
stress Gentamicin 0.001 mg/ml +0.3 -0.3 N.D. N.D. N.D.
carbon source carbon source Sucrose 5mM +0.4 -0.3 N.D. N.D. N.D.
phagefrs Time16-FRS +0.4 -0.2 N.D. N.D. N.D.
nitrogen source L-Leucine (N) +0.8 -0.2 N.D. N.D. N.D.
carbon source L-Glutamic (C) +0.3 +0.4 N.D. N.D. N.D.
carbon source L-Citrulline (C) +0.4 +0.2 N.D. N.D. N.D.
carbon source Cytidine (C) +0.3 +0.3 N.D. N.D. N.D.
denitrifying Nitrate reduction, replicate C t2 +0.2 +0.4 N.D. N.D. N.D.
carbon source Fumarate (C) +0.4 +0.3 N.D. N.D. N.D.
nitrogen source L-Isoleucine (N) +0.5 +0.2 N.D. N.D. N.D.
nitrogen source L-Valine (N) +0.5 +0.2 N.D. N.D. N.D.
carbon source L-Leucine (C) +0.3 +0.5 N.D. N.D. N.D.
carbon source casaminos (C) +0.7 +0.1 N.D. N.D. N.D.
pH Minimal media pH9 +0.5 +0.3 N.D. N.D. N.D.
nitrogen source D-Alanine (N) +0.5 +0.4 N.D. N.D. N.D.
lb LB +0.6 +0.3 N.D. N.D. N.D.
carbon source butyrate (C) +0.4 +0.6 N.D. N.D. N.D.
carbon source Tween 20 (C) +0.7 +0.4 N.D. N.D. N.D.
denitrifying Nitrate reduction, replicate C t1 +0.7 +0.4 N.D. N.D. N.D.
stress D-Cycloserine 0.1 mg/ml +0.8 +0.4 N.D. N.D. N.D.
carbon source D-Alanine (C) +0.6 +0.6 N.D. N.D. N.D.
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