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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_4087 and Pf1N1B4_4088 are separated by 122 nucleotides
Pf1N1B4_4088 and Pf1N1B4_4089 are separated by 400 nucleotides
Pf1N1B4_4089 and Pf1N1B4_4090 are separated by 646 nucleotides
Pf1N1B4_4090 and Pf1N1B4_4091 are separated by 111 nucleotides
Pf1N1B4_4087 - MISCELLANEOUS; Unknown, at 4,535,699 to 4,536,073
_4087
Pf1N1B4_4088 - MISCELLANEOUS; Unknown, at 4,536,196 to 4,536,567
_4088
Pf1N1B4_4089 - hypothetical protein, at 4,536,968 to 4,537,324
_4089
Pf1N1B4_4090 - Exoenzymes regulatory protein AepA in lipid-linked oligosaccharide synthesis cluster, at 4,537,971 to 4,539,713
_4090
Pf1N1B4_4091 - Probable signal peptide protein, at 4,539,825 to 4,540,565
_4091
Group
Condition
Pf1N1B4
_4087
Pf1N1B4
_4088
Pf1N1B4
_4089
Pf1N1B4
_4090
Pf1N1B4
_4091
carbon source
carbon source Sucrose 0.25mM
-2.3
N.D.
-0.4
-0.1
-0.9
pH
Minimal media pH9
-2.2
N.D.
-0.8
+0.4
+0.5
carbon source
carbon source Sucrose 0.25mM
-0.8
N.D.
+0.2
-0.3
-0.6
nitrogen source
L-Methionine (N)
-0.7
N.D.
-0.6
-0.1
+0.1
temperature
LB 37C
-0.4
N.D.
+0.7
-0.3
-1.4
stress
Cholin acetate 20 mM
-1.0
N.D.
+0.2
-0.0
-0.4
anaerobic
N2E2wt with N1B4m denitrifying repA
-0.5
N.D.
+0.1
+0.2
-0.7
stress
Benzethonium chloride 0.0125 mM
-0.1
N.D.
-1.2
+0.1
+0.3
temperature
LB 37C
+0.3
N.D.
+0.4
-0.5
-0.8
carbon source
carbon source Sucrose 0.5mM
+0.6
N.D.
+0.1
+0.0
-1.2
survival
4C survival; 24 hrs
-0.7
N.D.
-0.2
+0.2
+0.3
stress
Rifampicin 0.004 mg/ml
+0.5
N.D.
-0.6
+0.1
-0.3
carbon source
carbon source Sucrose 5mM
-0.3
N.D.
-0.5
+0.4
+0.4
nitrogen source
L-Isoleucine (N)
-0.1
N.D.
-0.5
+0.3
+0.5
nitrogen source
Thymine (N)
-0.7
N.D.
+1.0
-0.2
+0.4
stress
Cephalothin 2.5 mg/ml
+1.0
N.D.
-0.3
-0.1
-0.1
nitrogen source
Ammonium chloride (N)
-0.4
N.D.
+0.9
-0.1
+0.3
carbon source
L-Leucine (C)
+0.4
N.D.
-0.4
+0.4
+0.3
carbon source
D-Alanine (C)
+0.4
N.D.
-0.5
+0.2
+0.6
stress
Dimethyl Sulfoxide 5 vol%
+0.9
N.D.
-0.5
+0.2
+0.3
carbon source
D-Trehalose (C)
+0.8
N.D.
-0.5
+0.3
+0.3
carbon source
L-Glutamine (C)
+1.0
N.D.
-0.3
-0.0
+0.4
carbon source
Putrescine (C)
+0.8
N.D.
-0.2
+0.2
+0.3
denitrifying
Nitrate reduction, replicate C t1
+0.5
N.D.
+0.2
-0.2
+0.7
stress
D-Cycloserine 0.1 mg/ml
+0.5
N.D.
-0.2
+0.2
+0.8
nitrogen source
Cytosine (N)
+0.1
N.D.
+1.0
-0.1
+0.3
carbon source
casaminos (C)
+0.6
N.D.
-0.1
+0.2
+0.7
nitrogen source
L-Citrulline (N)
+0.8
N.D.
+0.1
+0.3
+0.2
carbon source
L-Isoleucine (C)
+0.8
N.D.
+0.2
+0.0
+0.5
carbon source
Tween 20 (C)
+0.7
N.D.
+0.2
+0.0
+0.7
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