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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_4085 and Pf1N1B4_4086 are separated by 135 nucleotides
Pf1N1B4_4086 and Pf1N1B4_4087 are separated by 65 nucleotides
Pf1N1B4_4087 and Pf1N1B4_4088 are separated by 122 nucleotides
Pf1N1B4_4088 and Pf1N1B4_4089 are separated by 400 nucleotides
Pf1N1B4_4085 - probable exported protein YPO0702, at 4,533,444 to 4,534,475
_4085
Pf1N1B4_4086 - transcriptional regulator, LuxR family, at 4,534,611 to 4,535,633
_4086
Pf1N1B4_4087 - MISCELLANEOUS; Unknown, at 4,535,699 to 4,536,073
_4087
Pf1N1B4_4088 - MISCELLANEOUS; Unknown, at 4,536,196 to 4,536,567
_4088
Pf1N1B4_4089 - hypothetical protein, at 4,536,968 to 4,537,324
_4089
Group
Condition
Pf1N1B4
_4085
Pf1N1B4
_4086
Pf1N1B4
_4087
Pf1N1B4
_4088
Pf1N1B4
_4089
carbon source
carbon source Sucrose 0.25mM
-0.2
-0.4
-2.3
N.D.
-0.4
pH
Minimal media pH9
+0.1
+0.0
-2.2
N.D.
-0.8
carbon source
carbon source Sucrose 0.25mM
-0.7
-0.7
-0.8
N.D.
+0.2
carbon source
carbon source Sucrose 5mM
-0.3
-0.5
-0.3
N.D.
-0.5
stress
Cholin acetate 20 mM
-0.3
-0.2
-1.0
N.D.
+0.2
stress
Chlorite 1 mM
+0.2
-0.4
-0.6
N.D.
-0.4
nitrogen source
L-Methionine (N)
-0.1
+0.5
-0.7
N.D.
-0.6
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.8
-0.5
N.D.
+0.2
stress
Chloride 200 mM
-0.2
-0.6
+0.5
N.D.
-0.5
carbon source
carbon source Sucrose 1mM
-0.7
+0.1
+0.4
N.D.
-0.5
stress
Benzethonium chloride 0.0125 mM
+0.4
+0.2
-0.1
N.D.
-1.2
nitrogen source
nitrogen source nitrate 5mM
-0.3
-0.3
+0.6
N.D.
-0.5
phagefrs
Time16-FRS
-0.5
-0.5
+0.4
N.D.
+0.1
stress
Rifampicin 0.004 mg/ml
+0.3
-0.5
+0.5
N.D.
-0.6
carbon source
carbon source Sucrose 5mM
+0.0
-0.7
+0.7
N.D.
+0.0
carbon source
carbon source Sucrose 1mM
-0.5
+0.5
-0.2
N.D.
+0.3
nitrogen source
Ammonium chloride (N)
+0.0
-0.3
-0.4
N.D.
+0.9
denitrifying
Nitrate reduction, replicate B
+0.6
+0.4
+0.2
N.D.
-0.9
carbon source
L-Glutamine (C)
-0.3
+0.0
+1.0
N.D.
-0.3
stress
Cephalothin 2.5 mg/ml
-0.1
-0.1
+1.0
N.D.
-0.3
temperature
LB 37C
+0.8
-0.6
-0.4
N.D.
+0.7
carbon source
D-Fructose (C)
+0.4
+0.0
-0.5
N.D.
+0.7
nitrogen source
Thymine (N)
+0.4
+0.0
-0.7
N.D.
+1.0
stress
Dimethyl Sulfoxide 5 vol%
+0.2
+0.2
+0.9
N.D.
-0.5
nitrogen source
Carnitine Hydrochloride (N)
-0.3
+0.4
+0.7
N.D.
+0.2
carbon source
Putrescine (C)
-0.1
+0.6
+0.8
N.D.
-0.2
nitrogen source
Cytosine (N)
+0.3
-0.1
+0.1
N.D.
+1.0
carbon source
L-Lactate (C)
+0.4
+0.4
+0.3
N.D.
+0.4
carbon source
D-Lactate (C)
+0.4
+0.3
+0.3
N.D.
+0.6
carbon source
pyruvate (C)
+0.1
+0.4
+0.4
N.D.
+0.8
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