Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4061 and Pf1N1B4_4062 are separated by 172 nucleotidesPf1N1B4_4062 and Pf1N1B4_4063 overlap by 1 nucleotidesPf1N1B4_4063 and Pf1N1B4_4064 are separated by 15 nucleotidesPf1N1B4_4064 and Pf1N1B4_4065 are separated by 0 nucleotides Pf1N1B4_4061 - Outer membrane lipoprotein carrier protein LolA, at 4,515,501 to 4,516,124 _4061 Pf1N1B4_4062 - FIG065221: Holliday junction DNA helicase, at 4,516,297 to 4,517,619 _4062 Pf1N1B4_4063 - CrcB protein, at 4,517,619 to 4,517,993 _4063 Pf1N1B4_4064 - Seryl-tRNA synthetase (EC 6.1.1.11), at 4,518,009 to 4,519,289 _4064 Pf1N1B4_4065 - Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 4,519,290 to 4,520,684 _4065
Group Condition Pf1N1B4_4061 Pf1N1B4_4062 Pf1N1B4_4063 Pf1N1B4_4064 Pf1N1B4_4065
stress sodium fluoride 12.5 mM N.D. -2.0 -3.6 N.D. -0.3
stress sodium fluoride 12.5 mM N.D. -1.5 -3.9 N.D. -0.3
nitrogen source L-Histidine (N) N.D. -0.3 -0.8 N.D. -3.2
carbon source carbon source Sucrose 0.5mM N.D. -0.5 +0.2 N.D. -3.7
nitrogen source nitrogen source Ammonium chloride 20mM N.D. -0.4 +0.1 N.D. -3.7
carbon source carbon source Sucrose 1mM N.D. -1.1 -0.3 N.D. -2.5
nitrogen source nitrogen source Ammonium chloride 20mM N.D. -0.2 -0.3 N.D. -3.2
nitrogen source L-Glutamic (N) N.D. -0.1 -0.7 N.D. -3.0
carbon source D-Lactate (C) N.D. -0.2 -0.7 N.D. -2.8
pH Minimal media pH9 N.D. +0.2 +0.2 N.D. -3.9
nitrogen source L-Arginine (N) N.D. -0.3 -0.1 N.D. -3.1
carbon source L-Arabinose (C) N.D. -0.2 -0.4 N.D. -2.8
carbon source Fumarate (C) N.D. -0.2 -0.5 N.D. -2.7
pH Minimal media pH7 N.D. -0.4 -0.0 N.D. -3.0
pH Minimal media pH7 N.D. -0.3 -0.1 N.D. -2.8
carbon source D-Lactate (C) N.D. -0.2 -0.3 N.D. -2.7
pH Minimal media pH9 N.D. -0.1 -0.1 N.D. -3.0
nitrogen source nitrogen source nitrate 20mM N.D. -0.4 -0.2 N.D. -2.6
carbon source carbon source Sucrose 0.25mM N.D. -0.1 +0.2 N.D. -3.2
nitrogen source nitrogen source nitrate 5mM N.D. -0.2 -0.2 N.D. -2.8
carbon source Carnitine Hydrochloride (C) N.D. -0.2 -0.4 N.D. -2.5
nitrogen source L-Citrulline (N) N.D. -0.2 -0.2 N.D. -2.7
carbon source carbon source Sucrose 5mM N.D. -0.3 -0.8 N.D. -2.1
anaerobic N2E2wt with N1B4m denitrifying repA N.D. +0.1 -0.5 N.D. -2.7
pH Minimal media pH8 N.D. -0.0 +0.4 N.D. -3.2
carbon source D-Galactose (C) N.D. -0.1 +0.3 N.D. -3.0
carbon source L-Lactate (C) N.D. -0.2 +0.2 N.D. -2.8
carbon source D-Glucose (C) N.D. -0.1 +0.3 N.D. -2.8
nitrogen source Ammonium chloride (N) N.D. -0.4 +0.5 N.D. -2.6
nitrogen source nitrate (N) N.D. -0.2 +0.4 N.D. -2.5
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