Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_4008 and Pf1N1B4_4009 overlap by 1 nucleotidesPf1N1B4_4009 and Pf1N1B4_4010 overlap by 4 nucleotidesPf1N1B4_4010 and Pf1N1B4_4011 are separated by 8 nucleotidesPf1N1B4_4011 and Pf1N1B4_4012 are separated by 10 nucleotides Pf1N1B4_4008 - Various polyols ABC transporter, ATP-binding component, at 4,459,474 to 4,460,568 _4008 Pf1N1B4_4009 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 4,460,568 to 4,461,665 _4009 Pf1N1B4_4010 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 4,461,662 to 4,462,528 _4010 Pf1N1B4_4011 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 4,462,537 to 4,463,337 _4011 Pf1N1B4_4012 - Probable transmembrane protein, at 4,463,348 to 4,463,620 _4012
Group Condition Pf1N1B4_4008 Pf1N1B4_4009 Pf1N1B4_4010 Pf1N1B4_4011 Pf1N1B4_4012
nitrogen source L-Methionine (N) -0.9 -0.5 -0.5 -0.2 N.D.
carbon source octanoate (C) -0.5 -0.9 -0.5 -0.1 N.D.
nitrogen source L-Leucine (N) -1.0 -0.2 -0.1 -0.3 N.D.
anaerobic N2E2wt with N1B4m denitrifying repB -0.1 -0.0 -0.2 -1.2 N.D.
stress benzoic 0.58 mg/ml -0.4 -0.6 -0.2 -0.3 N.D.
stress Dimethyl Sulfoxide 5 vol% -0.9 -0.3 -0.1 -0.2 N.D.
carbon source L-Valine (C) -0.3 -0.2 -0.4 -0.5 N.D.
carbon source D-Trehalose (C) -0.5 -0.2 -0.1 -0.6 N.D.
stress Benzethonium chloride 0.0125 mM -0.2 -0.2 -0.3 -0.6 N.D.
carbon source Glycerol (C) -0.2 -0.4 -0.2 -0.5 N.D.
carbon source casaminos (C) -0.3 -0.2 -0.1 -0.7 N.D.
carbon source D-Galacturonic Acid (C) +0.0 -0.4 -0.1 -0.8 N.D.
carbon source carbon source Sucrose 0.25mM -0.5 -0.8 +0.5 -0.5 N.D.
stress nitrite 10 mM +0.3 -1.0 -0.0 -0.3 N.D.
stress D-Cycloserine 0.1 mg/ml -0.4 -0.2 +0.4 -0.4 N.D.
carbon source carbon source Sucrose 1mM +0.4 -0.7 -0.0 -0.2 N.D.
nitrogen source Uridine (N) -0.5 +0.9 -0.6 -0.1 N.D.
temperature LB 37C +0.0 -0.3 -0.6 +0.6 N.D.
carbon source D-Galactose (C) +0.4 -0.5 +0.2 -0.3 N.D.
carbon source D,L-Lactate (C) +0.5 +0.1 -0.1 -0.5 N.D.
nitrogen source Adenine (N) -0.1 +0.8 -0.5 -0.0 N.D.
anaerobic Nitrate reduction +0.6 -0.4 +0.3 -0.2 N.D.
nitrogen source Cytidine (N) -0.3 +1.0 -0.4 +0.2 N.D.
nitrogen source nitrate (N) -0.4 +1.0 -0.2 +0.0 N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.3 +0.4 -0.4 +0.3 N.D.
nitrogen source Ammonium chloride (N) -0.1 +0.9 -0.3 +0.2 N.D.
denitrifying Nitrate reduction, replicate B t2 +0.4 -0.2 +0.0 +0.7 N.D.
carbon source carbon source Sucrose 1mM +0.4 +0.7 -0.0 -0.3 N.D.
denitrifying Nitrate reduction, replicate A +0.6 +0.3 +0.5 -0.0 N.D.
carbon source carbon source Sucrose 0.25mM +1.4 +0.5 -0.0 -0.0 N.D.
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