Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_3981 and Pf1N1B4_3982 are separated by 483 nucleotidesPf1N1B4_3982 and Pf1N1B4_3983 are separated by 120 nucleotidesPf1N1B4_3983 and Pf1N1B4_3984 are separated by 39 nucleotidesPf1N1B4_3984 and Pf1N1B4_3985 overlap by 1 nucleotides Pf1N1B4_3981 - Predicted carboxypeptidase, at 4,422,063 to 4,423,214 _3981 Pf1N1B4_3982 - FIG00953347: hypothetical protein, at 4,423,698 to 4,424,039 _3982 Pf1N1B4_3983 - cI, at 4,424,160 to 4,424,834 _3983 Pf1N1B4_3984 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data), at 4,424,874 to 4,426,829 _3984 Pf1N1B4_3985 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 4,426,829 to 4,427,644 _3985
Group Condition Pf1N1B4_3981 Pf1N1B4_3982 Pf1N1B4_3983 Pf1N1B4_3984 Pf1N1B4_3985
carbon source L-Leucine (C) -0.3 +0.3 +0.2 -2.3 -2.7
carbon source L-Valine (C) +0.1 -0.3 -0.2 -1.7 -2.1
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A -0.4 -0.1 -0.0 -0.2 -2.7
nitrogen source L-Leucine (N) -0.4 -0.1 +0.1 -0.6 -2.0
denitrifying Nitrate reduction, replicate B +0.2 -0.7 +0.1 -1.5 -1.1
carbon source L-Isoleucine (C) -0.4 -0.2 -0.1 -0.5 -1.7
carbon source casaminos (C) -0.4 +0.0 -0.1 -0.5 -1.7
anaerobic Nitrate reduction -0.0 -0.3 -0.1 -1.6 -0.8
stress Paraquat dichloride 0.016 mg/mL -0.5 +0.6 -0.1 +0.1 -2.6
anaerobic Nitrate reduction +0.4 -0.8 +0.1 -0.6 -1.5
nophagecontrol Time16-nophage -0.8 +0.1 -0.2 -0.4 -1.1
carbon source L-Arginine (C) +0.3 -0.2 +0.3 -1.0 -1.8
anaerobic Nitrate reduction -0.6 +0.5 -0.1 -0.3 -1.8
temperature LB 37C -2.7 -0.1 -0.0 +0.2 +0.5
denitrifying Nitrate reduction, replicate A +0.4 -0.5 +0.0 -0.7 -0.9
carbon source a-Ketoglutaric (C) -0.8 +0.2 -0.3 +0.4 -1.1
temperature LB 37C -1.1 -0.0 -0.6 +0.7 -0.6
carbon source L-Lactate (C) -1.7 +0.3 +0.0 +0.3 -0.5
stress sodium fluoride 12.5 mM -0.4 +0.4 +0.2 +0.3 -1.8
carbon source pyruvate (C) -0.2 +0.7 -0.5 +0.1 -1.3
stress Nalidixic 0.004 mg/ml -0.6 +0.5 +0.2 -0.2 -1.0
nitrogen source nitrogen source nitrite 0.1mM -1.1 -0.2 -0.4 +0.1 +0.9
carbon source carbon source Sucrose 1mM +1.7 -0.1 -0.7 -0.0 -1.5
stress Doxycycline hyclate 0.0001 mg/ml +0.8 +0.5 -0.9 -0.0 -0.5
carbon source carbon source Sucrose 5mM +0.7 -0.0 -1.4 +0.1 +0.7
carbon source octanoate (C) +0.7 +0.3 +0.4 -0.5 -0.7
lb LB +1.2 +0.3 -0.2 -0.1 -0.7
denitrifying Nitrate reduction, replicate C t3 +0.3 -1.3 +0.2 +0.7 +0.6
denitrifying Nitrate reduction, replicate A t2 +0.7 -0.7 -0.4 +0.4 +1.1
denitrifying Nitrate reduction, replicate C t2 +1.0 -0.6 +0.4 +0.7 +1.5
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