Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_3959 and Pf1N1B4_3960 are separated by 113 nucleotidesPf1N1B4_3960 and Pf1N1B4_3961 are separated by 119 nucleotidesPf1N1B4_3961 and Pf1N1B4_3962 are separated by 284 nucleotidesPf1N1B4_3962 and Pf1N1B4_3963 are separated by 10 nucleotides Pf1N1B4_3959 - 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37), at 4,397,919 to 4,399,028 _3959 Pf1N1B4_3960 - Phosphonate uptake and metabolism regulator, LysR-family, at 4,399,142 to 4,400,005 _3960 Pf1N1B4_3961 - transcriptional regulator, MerR family, at 4,400,125 to 4,400,997 _3961 Pf1N1B4_3962 - Glycerol-3-phosphate transporter, at 4,401,282 to 4,402,607 _3962 Pf1N1B4_3963 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49), at 4,402,618 to 4,404,009 _3963
Group Condition Pf1N1B4_3959 Pf1N1B4_3960 Pf1N1B4_3961 Pf1N1B4_3962 Pf1N1B4_3963
stress Doxycycline hyclate 0.0001 mg/ml -1.0 N.D. -1.0 +0.5 -0.8
nitrogen source nitrogen source nitrite 0.1mM -0.7 N.D. -0.2 -0.5 -0.3
anaerobic Nitrate reduction -0.6 N.D. -0.4 +0.2 -0.2
carbon source carbon source Sucrose 0.25mM +0.4 N.D. -1.3 +0.0 -0.3
nitrogen source D-Glucosamine Hydrochloride (N) +0.3 N.D. -0.8 -0.1 -0.2
phagefrs Time16-FRS -0.4 N.D. -0.5 -0.2 +0.3
stress Fusidic 0.125 mg/ml +0.3 N.D. -0.6 -0.1 -0.5
nophagecontrol TIme6-nophage -0.0 N.D. -1.1 +0.0 +0.3
carbon source carbon source Sucrose 5mM -0.4 N.D. -0.6 -0.1 +0.4
stress Chloride 300 mM -0.2 N.D. -0.7 +0.7 -0.1
nitrogen source L-Methionine (N) -0.3 N.D. -0.6 +0.3 +0.2
denitrifying Nitrate reduction, replicate A +0.2 N.D. -0.7 +0.0 +0.4
stress Carbenicillin 2 mg/ml -0.3 N.D. +0.5 +0.2 -0.4
stress Benzethonium chloride 0.0125 mM -0.8 N.D. +1.0 -0.2 -0.1
nitrogen source Putrescine (N) +0.5 N.D. -0.6 +0.2 -0.1
carbon source L-Histidine (C) +0.6 N.D. -0.6 +0.1 -0.1
anaerobic Nitrate reduction -0.8 N.D. +0.4 +0.3 +0.3
nitrogen source nitrogen source nitrite 0.5mM -0.6 N.D. +0.5 +0.2 +0.2
temperature LB 37C -0.6 N.D. +1.1 -0.3 +0.3
carbon source carbon source Sucrose 0.5mM +0.1 N.D. +0.9 +0.2 -0.7
nitrogen source L-Leucine (N) +0.5 N.D. -0.4 +0.3 +0.2
stress Bacitracin 2 mg/ml -0.4 N.D. +0.3 +0.5 +0.4
anaerobic N2E2wt with N1B4m denitrifying repA +0.1 N.D. +0.9 -0.4 +0.2
carbon source a-Ketoglutaric (C) +0.6 N.D. -0.3 +0.4 +0.2
carbon source carbon source Sucrose 0.25mM +0.6 N.D. +0.6 -0.2 +0.0
pH Minimal media pH7 +0.6 N.D. +0.1 -0.1 +0.5
carbon source L-Lactate (C) +0.6 N.D. +0.3 +0.2 +0.3
carbon source carbon source Sucrose 1mM -0.0 N.D. +0.7 +0.5 +0.3
nitrogen source nitrogen source nitrite 1mM +0.2 N.D. +0.7 +0.4 +0.1
carbon source carbon source Sucrose 1mM -0.5 N.D. +1.8 +0.4 +0.5
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