Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_386 and Pf1N1B4_387 overlap by 24 nucleotidesPf1N1B4_387 and Pf1N1B4_388 are separated by 120 nucleotidesPf1N1B4_388 and Pf1N1B4_389 overlap by 4 nucleotidesPf1N1B4_389 and Pf1N1B4_390 are separated by 9 nucleotides Pf1N1B4_386 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 455,166 to 456,605 _386 Pf1N1B4_387 - hypothetical protein, at 456,582 to 456,695 _387 Pf1N1B4_388 - OmpA family protein, at 456,816 to 457,628 _388 Pf1N1B4_389 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 457,625 to 457,981 _389 Pf1N1B4_390 - Extracellular solute-binding protein, family 3, at 457,991 to 458,827 _390
Group Condition Pf1N1B4_386 Pf1N1B4_387 Pf1N1B4_388 Pf1N1B4_389 Pf1N1B4_390
stress Doxycycline hyclate 0.0001 mg/ml -0.3 +0.3 -3.0 -3.3 +0.1
stress Fusidic 0.125 mg/ml -0.1 -1.0 -1.6 -0.8 -0.3
stress Benzethonium chloride 0.0125 mM +0.1 +0.3 -2.1 -2.3 +0.1
stress Nalidixic 0.004 mg/ml +0.0 -0.1 -1.7 -1.7 +0.1
stress Rifampicin 0.004 mg/ml -0.0 +0.5 -2.0 -2.1 +0.4
stress Fusidic 0.0625 mg/ml +0.0 -0.1 -1.9 -1.4 +0.2
carbon source octanoate (C) +0.0 +0.4 -1.1 -2.1 -0.0
stress Tetracycline 0.0004 mg/ml +0.0 -0.6 -0.7 -1.2 +0.1
stress methylglyoxal 0.008 vol% +0.2 +0.3 -1.0 -0.9 -0.1
nitrogen source L-Serine (N) -1.2 -0.9 +0.3 +0.3 +0.1
denitrifying Nitrate reduction, replicate C t1 -0.3 -0.6 +0.8 +0.7 -0.3
denitrifying Nitrate reduction, replicate C t2 -0.3 -0.5 +0.8 +0.6 -0.2
denitrifying Nitrate reduction, replicate C t3 -0.4 +0.1 +1.0 +0.6 -0.0
denitrifying Nitrate reduction, replicate B t1 -0.3 -0.0 +1.1 +0.5 +0.1
carbon source carbon source Sucrose 0.25mM -0.2 -0.4 +0.9 +0.8 +0.4
stress nitrate 100 mM +0.1 +0.0 +0.8 +0.9 -0.1
stress Sisomicin 0.001 mg/ml +0.6 -0.1 +0.8 +0.6 -0.2
stress Cobalt chloride 0.3125 mM +0.9 +1.3 -0.3 +0.2 -0.3
denitrifying Nitrate reduction, replicate A t2 -0.1 +0.4 +0.7 +1.1 +0.0
stress Gentamicin 0.001 mg/ml +0.5 +0.4 +0.5 +0.8 -0.1
carbon source carbon source Sucrose 1mM -0.3 +1.1 +0.2 +0.8 +0.3
carbon source m-Inositol (C) +0.5 +0.9 +0.4 +0.2 +0.1
denitrifying Nitrate reduction, replicate A t1 -0.0 +0.6 +0.7 +1.2 -0.3
carbon source carbon source Sucrose 0.25mM -0.2 +0.9 +0.4 +0.9 +0.1
pH Minimal media pH9 +0.1 +0.2 +0.7 +0.7 +0.4
nitrogen source L-Leucine (N) +1.3 +1.0 +0.0 +0.2 +0.0
pH Minimal media pH9 +0.2 +0.8 +1.0 +0.8 -0.0
carbon source carbon source Sucrose 1mM +0.4 +0.9 +0.2 +0.8 +0.6
carbon source L-Leucine (C) +1.2 +1.0 +0.5 +0.4 +0.1
stress Carbenicillin 2 mg/ml +0.4 +0.3 +2.3 +2.3 -0.1
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