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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_384 and Pf1N1B4_385 are separated by 158 nucleotides
Pf1N1B4_385 and Pf1N1B4_386 are separated by 87 nucleotides
Pf1N1B4_386 and Pf1N1B4_387 overlap by 24 nucleotides
Pf1N1B4_387 and Pf1N1B4_388 are separated by 120 nucleotides
Pf1N1B4_384 - proteinase inhibitor, at 454,198 to 454,452
_384
Pf1N1B4_385 - Translation initiation factor 2 (IF-2; GTPase), at 454,611 to 455,078
_385
Pf1N1B4_386 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 455,166 to 456,605
_386
Pf1N1B4_387 - hypothetical protein, at 456,582 to 456,695
_387
Pf1N1B4_388 - OmpA family protein, at 456,816 to 457,628
_388
Group
Condition
Pf1N1B4
_384
Pf1N1B4
_385
Pf1N1B4
_386
Pf1N1B4
_387
Pf1N1B4
_388
stress
Doxycycline hyclate 0.0001 mg/ml
-1.1
N.D.
-0.3
+0.3
-3.0
stress
Nalidixic 0.004 mg/ml
-1.0
N.D.
+0.0
-0.1
-1.7
stress
Fusidic 0.125 mg/ml
-0.1
N.D.
-0.1
-1.0
-1.6
nitrogen source
Cytidine (N)
-1.4
N.D.
-0.1
-0.7
-0.0
stress
methylglyoxal 0.008 vol%
-1.6
N.D.
+0.2
+0.3
-1.0
anaerobic
Nitrate reduction
-1.0
N.D.
-0.0
-0.9
-0.0
stress
Rifampicin 0.004 mg/ml
-0.4
N.D.
-0.0
+0.5
-2.0
stress
Tetracycline 0.0004 mg/ml
-0.5
N.D.
+0.0
-0.6
-0.7
stress
Benzethonium chloride 0.0125 mM
-0.0
N.D.
+0.1
+0.3
-2.1
stress
Fusidic 0.0625 mg/ml
+0.5
N.D.
+0.0
-0.1
-1.9
carbon source
carbon source Sucrose 0.5mM
-2.2
N.D.
+0.1
+0.3
+0.3
nitrogen source
L-Serine (N)
+0.5
N.D.
-1.2
-0.9
+0.3
carbon source
carbon source Sucrose 5mM
-1.5
N.D.
+0.0
+0.8
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-1.4
N.D.
-0.0
+0.4
+0.5
pH
Minimal media pH9
-1.4
N.D.
+0.1
+0.2
+0.7
carbon source
Fumarate (C)
-1.0
N.D.
-0.2
+0.6
+0.1
carbon source
carbon source Sucrose 0.25mM
-1.3
N.D.
-0.2
+0.9
+0.4
carbon source
acetate (C)
-1.0
N.D.
+0.3
+0.6
-0.1
denitrifying
Nitrate reduction, replicate C t3
-0.6
N.D.
-0.4
+0.1
+1.0
denitrifying
Nitrate reduction, replicate C t1
+0.2
N.D.
-0.3
-0.6
+0.8
nitrogen source
nitrogen source nitrite 0.1mM
+1.2
N.D.
-0.3
-0.4
-0.1
stress
Sisomicin 0.001 mg/ml
-0.9
N.D.
+0.6
-0.1
+0.8
carbon source
m-Inositol (C)
-1.2
N.D.
+0.5
+0.9
+0.4
stress
Aluminum chloride 2.5 mM
+0.9
N.D.
+0.4
-0.5
+0.4
denitrifying
Nitrate reduction, replicate B t1
+0.5
N.D.
-0.3
-0.0
+1.1
stress
Cobalt chloride 0.3125 mM
-0.2
N.D.
+0.9
+1.3
-0.3
nitrogen source
L-Leucine (N)
-0.6
N.D.
+1.3
+1.0
+0.0
carbon source
L-Leucine (C)
-0.3
N.D.
+1.2
+1.0
+0.5
pH
Minimal media pH9
+0.4
N.D.
+0.2
+0.8
+1.0
stress
Carbenicillin 2 mg/ml
-0.2
N.D.
+0.4
+0.3
+2.3
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