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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_3793 and Pf1N1B4_3794 overlap by 2 nucleotides
Pf1N1B4_3794 and Pf1N1B4_3795 are separated by 477 nucleotides
Pf1N1B4_3795 and Pf1N1B4_3796 are separated by 24 nucleotides
Pf1N1B4_3796 and Pf1N1B4_3797 are separated by 107 nucleotides
Pf1N1B4_3793 - COG2010: Cytochrome c, mono- and diheme variants, at 4,201,328 to 4,202,149
_3793
Pf1N1B4_3794 - hypothetical protein, at 4,202,148 to 4,202,318
_3794
Pf1N1B4_3795 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 4,202,796 to 4,204,001
_3795
Pf1N1B4_3796 - Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 4,204,026 to 4,206,170
_3796
Pf1N1B4_3797 - Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 4,206,278 to 4,207,012
_3797
Group
Condition
Pf1N1B4
_3793
Pf1N1B4
_3794
Pf1N1B4
_3795
Pf1N1B4
_3796
Pf1N1B4
_3797
carbon source
carbon source Sucrose 0.25mM
-0.4
-0.9
-2.0
-1.4
-0.4
anaerobic
Nitrate reduction
-1.0
+0.2
-1.4
+0.0
-0.5
nitrogen source
Uridine (N)
-0.3
+0.2
-1.5
-0.4
-0.1
carbon source
carbon source Sucrose 0.25mM
+0.1
-1.1
-0.7
-0.8
+0.5
stress
Benzethonium chloride 0.0125 mM
+0.5
+0.2
-1.7
-0.8
-0.0
stress
1-ethyl-3-methylimidazolium lysine 5 mM
-0.8
+0.1
-0.9
-0.3
+0.2
nitrogen source
Cytidine (N)
-0.8
-0.5
-0.5
-0.1
+0.2
stress
Spectinomycin 0.025 mg/ml
+0.3
-0.5
-1.7
+0.0
+0.2
stress
Chloride 200 mM
-1.2
+0.2
-0.2
-0.4
+0.2
stress
Tetracycline 0.0004 mg/ml
+0.5
-0.1
-0.9
-0.3
-0.3
carbon source
Fumarate (C)
-0.4
+0.6
-1.2
+0.2
-0.5
carbon source
D,L-Lactate (C)
-0.3
+0.6
-1.2
+0.0
-0.1
nitrogen source
nitrogen source nitrate 5mM
+0.2
-1.2
+0.3
-0.4
+0.1
stress
nitrite 10 mM
+0.2
+0.6
-0.3
-0.3
-0.9
lb
LB
-0.3
+0.6
-0.7
-0.3
+0.5
stress
Doxycycline hyclate 0.0001 mg/ml
+0.3
-0.6
-0.2
-0.6
+0.8
stress
D-Cycloserine 0.1 mg/ml
-0.3
-0.7
+0.8
+0.2
-0.2
denitrifying
Nitrate reduction, replicate B t2
+1.0
+0.5
-0.4
-0.1
-0.5
denitrifying
Nitrate reduction, replicate A
+0.6
+0.8
-0.6
-0.2
-0.2
carbon source
D-Glucose (C)
+0.6
+0.8
-0.6
-0.1
-0.2
temperature
LB 37C
+0.4
+0.7
-0.4
-0.3
+0.3
pH
Minimal media pH9
+0.8
+0.4
-0.8
+0.1
+0.4
carbon source
carbon source Sucrose 1mM
-0.3
-0.7
+0.8
+0.3
+0.9
carbon source
Tween 20 (C)
+0.5
+0.4
+0.9
+0.0
-0.6
lb
LB
-0.4
+0.8
+0.7
-0.1
+0.2
carbon source
carbon source Sucrose 0.5mM
-0.9
+0.1
+1.4
+0.3
+0.5
nitrogen source
L-Leucine (N)
-0.2
+0.7
+0.9
+0.4
-0.2
carbon source
L-Isoleucine (C)
+0.0
+1.1
+0.5
+0.3
-0.3
carbon source
L-Asparagine (C)
+0.1
+0.7
+1.0
+0.3
+0.1
stress
Fusidic 0.125 mg/ml
+0.3
+0.9
+1.5
+0.5
+0.1
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