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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_3723 and Pf1N1B4_3724 are separated by 61 nucleotides
Pf1N1B4_3724 and Pf1N1B4_3725 are separated by 140 nucleotides
Pf1N1B4_3725 and Pf1N1B4_3726 are separated by 32 nucleotides
Pf1N1B4_3726 and Pf1N1B4_3727 are separated by 412 nucleotides
Pf1N1B4_3723 - FIG00957314: hypothetical protein, at 4,130,190 to 4,130,441
_3723
Pf1N1B4_3724 - DNA recombination protein RmuC, at 4,130,503 to 4,131,981
_3724
Pf1N1B4_3725 - Sensory box histidine kinase/response regulator, at 4,132,122 to 4,134,224
_3725
Pf1N1B4_3726 - Sensory box histidine kinase/response regulator, at 4,134,257 to 4,135,591
_3726
Pf1N1B4_3727 - C4-dicarboxylate transporter/malic acid transport protein, at 4,136,004 to 4,137,155
_3727
Group
Condition
Pf1N1B4
_3723
Pf1N1B4
_3724
Pf1N1B4
_3725
Pf1N1B4
_3726
Pf1N1B4
_3727
carbon source
acetate (C)
-0.0
-0.3
-2.5
-3.1
-0.2
carbon source
acetate (C)
-0.2
-0.4
-2.2
-2.5
-0.0
carbon source
Carnitine Hydrochloride (C)
-0.5
-0.0
-2.0
-1.5
-0.3
carbon source
pyruvate (C)
+0.4
-0.4
-1.8
-1.3
-0.3
carbon source
m-Inositol (C)
-1.0
-0.1
-1.1
-1.0
-0.1
carbon source
carbon source Sucrose 0.25mM
-0.5
-0.3
-0.8
-1.4
-0.2
carbon source
L-Leucine (C)
-0.5
-0.2
-1.0
-1.5
+0.2
carbon source
Cytidine (C)
-0.3
-0.0
-0.9
-1.3
-0.1
carbon source
pyruvate (C)
-0.3
-0.3
-0.6
-1.1
-0.1
stress
Aluminum chloride 2.5 mM
-0.8
-0.6
-0.2
-0.0
-0.6
carbon source
carbon source Sucrose 1mM
-0.3
-1.0
-0.5
-0.1
-0.3
carbon source
L-Arginine (C)
-0.6
-0.2
-0.3
-1.0
-0.0
carbon source
D-Galacturonic Acid (C)
-0.9
-0.1
-0.5
-0.5
-0.1
stress
Sisomicin 0.001 mg/ml
-0.5
-0.9
-0.1
-0.1
-0.3
nitrogen source
L-Methionine (N)
-1.0
-0.3
-0.0
-0.2
-0.4
carbon source
D-Trehalose (C)
-0.9
-0.2
-0.3
-0.5
-0.0
stress
Cholin acetate 20 mM
-0.5
-0.4
-0.5
-0.1
+0.1
carbon source
carbon source Sucrose 0.25mM
+0.2
-0.5
-0.5
-1.0
+0.3
pH
Minimal media pH9
-1.1
+0.2
+0.0
-0.3
-0.1
carbon source
D-Fructose (C)
-0.5
-0.4
-0.5
-0.1
+0.3
anaerobic
Nitrate reduction
+0.6
-0.8
-0.5
-0.2
-0.2
pH
Minimal media pH9
-1.0
-0.1
-0.3
-0.0
+0.3
stress
Carbenicillin 2 mg/ml
-0.6
-0.7
+0.3
-0.1
+0.1
denitrifying
Nitrate reduction, replicate B
-0.0
-0.3
+0.4
-0.7
-0.3
nitrogen source
nitrogen source nitrite 0.1mM
+0.1
-0.9
+0.4
-0.3
-0.1
denitrifying
Nitrate reduction, replicate A
+0.3
-0.2
+0.4
-1.3
+0.0
stress
Benzethonium chloride 0.0125 mM
+0.4
-0.9
+0.5
-0.1
+0.1
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
+0.4
-0.7
+0.5
+0.3
-0.1
stress
Spectinomycin 0.025 mg/ml
+0.1
-0.6
+0.4
+0.4
+0.2
temperature
LB 37C
+1.0
-0.2
-0.0
+0.4
-0.2
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