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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_3707 and Pf1N1B4_3708 overlap by 4 nucleotides
Pf1N1B4_3708 and Pf1N1B4_3709 overlap by 4 nucleotides
Pf1N1B4_3709 and Pf1N1B4_3710 overlap by 8 nucleotides
Pf1N1B4_3710 and Pf1N1B4_3711 overlap by 4 nucleotides
Pf1N1B4_3707 - Cobyrinic acid A,C-diamide synthase, at 4,115,664 to 4,117,046
_3707
Pf1N1B4_3708 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 4,117,043 to 4,117,693
_3708
Pf1N1B4_3709 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 4,117,690 to 4,118,598
_3709
Pf1N1B4_3710 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 4,118,591 to 4,119,583
_3710
Pf1N1B4_3711 - Cobyric acid synthase (EC 6.3.5.10), at 4,119,580 to 4,121,073
_3711
Group
Condition
Pf1N1B4
_3707
Pf1N1B4
_3708
Pf1N1B4
_3709
Pf1N1B4
_3710
Pf1N1B4
_3711
carbon source
L-Glutamic (C)
-1.8
-0.0
-1.5
-1.6
-1.3
nitrogen source
L-Glutamic (N)
-1.3
-0.4
-1.1
-0.6
-1.5
carbon source
Putrescine (C)
-1.1
+0.1
-0.8
-0.9
-1.3
nitrogen source
L-Histidine (N)
-0.8
-0.1
-1.0
-0.7
-1.2
nitrogen source
L-Arginine (N)
-1.0
-0.3
-0.8
-0.7
-1.0
nitrogen source
Putrescine (N)
-1.3
+0.6
-1.4
-0.8
-1.0
carbon source
D-Glucose (C)
-0.5
-0.4
-1.4
-0.5
-0.6
pH
Minimal media pH7
-0.7
-0.1
-1.2
-0.5
-0.8
carbon source
L-Malic (C)
-1.0
+0.4
-0.8
-0.9
-1.0
carbon source
Glycerol (C)
-0.8
-0.2
-0.7
-0.4
-1.1
carbon source
Tween 20 (C)
-1.2
+0.5
-0.5
-0.7
-1.2
carbon source
L-Glutamine (C)
-1.1
-0.1
-0.3
-0.4
-1.0
carbon source
L-Asparagine (C)
-1.0
+0.5
-0.9
-0.4
-1.1
carbon source
D-Glucose (C)
-0.8
-0.1
-0.8
-0.5
-0.6
carbon source
L-Histidine (C)
-0.4
-0.6
-0.5
-0.3
-0.7
nitrogen source
nitrate (N)
-0.6
-0.2
+0.2
-1.4
-0.5
pH
Minimal media pH7
-0.8
+0.1
-1.1
-0.3
-0.4
nitrogen source
Carnitine Hydrochloride (N)
-0.7
+0.3
-0.7
-0.5
-1.0
nitrogen source
L-Isoleucine (N)
-0.7
-0.1
-0.9
+0.2
-0.9
pH
Minimal media pH9
-0.5
-0.1
-1.0
+0.2
-0.8
carbon source
D-Trehalose (C)
-1.0
+0.4
-0.9
-0.2
-0.5
nitrogen source
Ammonium chloride (N)
-0.8
+0.5
-0.2
-1.0
-0.7
carbon source
D-Alanine (C)
-0.9
+0.3
-0.5
-0.5
-0.5
pH
Minimal media pH8
-0.8
+0.8
-0.9
-0.4
-0.6
carbon source
L-Alanine (C)
-0.6
+0.6
-1.0
-0.4
-0.5
stress
Aluminum chloride 2.5 mM
-0.6
+0.5
-0.7
-0.2
-0.8
carbon source
D-Mannose (C)
-0.6
+0.8
-0.5
-0.1
-0.8
pH
Minimal media pH9
-0.2
+0.7
-1.1
-0.1
-0.4
carbon source
carbon source Sucrose 0.5mM
-0.5
+0.7
+0.7
+0.3
-0.7
stress
Benzethonium chloride 0.0125 mM
-0.1
+1.2
+0.6
-0.5
+0.2
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