Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_3702 and Pf1N1B4_3703 are separated by 165 nucleotidesPf1N1B4_3703 and Pf1N1B4_3704 are separated by 164 nucleotidesPf1N1B4_3704 and Pf1N1B4_3705 are separated by 68 nucleotidesPf1N1B4_3705 and Pf1N1B4_3706 are separated by 487 nucleotides Pf1N1B4_3702 - NLP/P60 family protein, at 4,111,158 to 4,111,721 _3702 Pf1N1B4_3703 - NLP/P60 family protein, at 4,111,887 to 4,112,423 _3703 Pf1N1B4_3704 - L-sorbosone dehydrogenase, at 4,112,588 to 4,113,901 _3704 Pf1N1B4_3705 - FIG00961250: hypothetical protein, at 4,113,970 to 4,114,554 _3705 Pf1N1B4_3706 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 4,115,042 to 4,115,653 _3706
Group Condition Pf1N1B4_3702 Pf1N1B4_3703 Pf1N1B4_3704 Pf1N1B4_3705 Pf1N1B4_3706
carbon source carbon source Sucrose 0.5mM N.D. -3.4 -0.5 -0.7 N.D.
carbon source carbon source Sucrose 1mM N.D. -1.4 -0.3 -0.4 N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 N.D. -1.0 -0.1 -0.7 N.D.
denitrifying Nitrate reduction, replicate A N.D. -1.4 -0.2 -0.1 N.D.
anaerobic N2E2wt with N1B4m denitrifying repB N.D. -1.6 -0.0 -0.1 N.D.
stress Aluminum chloride 2.5 mM N.D. -1.3 -0.1 -0.3 N.D.
carbon source Carnitine Hydrochloride (C) N.D. -1.6 +0.2 +0.1 N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 N.D. -1.4 +0.1 +0.1 N.D.
carbon source carbon source Sucrose 1mM N.D. -0.8 +0.0 -0.3 N.D.
nitrogen source L-Isoleucine (N) N.D. -1.2 +0.2 -0.0 N.D.
stress Thallium(I) acetate 0.008 mg/ml N.D. -0.9 -0.2 +0.1 N.D.
stress Thallium(I) acetate 0.008 mg/ml N.D. -0.8 +0.2 -0.3 N.D.
nitrogen source D-Alanine (N) N.D. -1.0 +0.2 -0.1 N.D.
stress Cholin acetate 10 mM N.D. -0.7 -0.3 +0.2 N.D.
nitrogen source L-Valine (N) N.D. -1.0 +0.2 +0.1 N.D.
nitrogen source L-Leucine (N) N.D. -0.9 +0.0 +0.2 N.D.
stress D-Cycloserine 0.1 mg/ml N.D. -0.8 +0.1 +0.3 N.D.
stress Fusidic 0.125 mg/ml N.D. -1.1 +0.3 +0.6 N.D.
pH Minimal media pH7 N.D. +0.7 -0.1 -0.4 N.D.
stress Fusidic 0.0625 mg/ml N.D. -0.4 +0.2 +0.5 N.D.
denitrifying Nitrate reduction, replicate C t2 N.D. +0.8 -0.2 -0.2 N.D.
nitrogen source D-Glucosamine Hydrochloride (N) N.D. +1.0 -0.1 -0.0 N.D.
stress benzoic 0.58 mg/ml N.D. +0.9 +0.1 +0.2 N.D.
stress Carbenicillin 2 mg/ml N.D. +0.8 -0.0 +0.5 N.D.
nitrogen source nitrogen source nitrite 1mM N.D. +0.8 +0.3 +0.2 N.D.
carbon source carbon source Sucrose 0.25mM N.D. +0.9 +0.1 +0.4 N.D.
carbon source octanoate (C) N.D. +0.9 +0.4 +0.1 N.D.
stress Doxycycline hyclate 0.0001 mg/ml N.D. +0.6 +0.6 +0.3 N.D.
stress Nalidixic 0.004 mg/ml N.D. +1.1 +0.3 +0.1 N.D.
stress Bacitracin 2 mg/ml N.D. +1.0 +0.2 +0.5 N.D.
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