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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_3538 and Pf1N1B4_3539 are separated by 136 nucleotides
Pf1N1B4_3539 and Pf1N1B4_3540 are separated by 72 nucleotides
Pf1N1B4_3540 and Pf1N1B4_3541 are separated by 99 nucleotides
Pf1N1B4_3541 and Pf1N1B4_3542 are separated by 191 nucleotides
Pf1N1B4_3538 - Transcriptional regulator, AraC family, at 3,945,177 to 3,945,935
_3538
Pf1N1B4_3539 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-) homolog, at 3,946,072 to 3,946,887
_3539
Pf1N1B4_3540 - Metal-dependent phosphohydrolase, HD subdomain, at 3,946,960 to 3,947,550
_3540
Pf1N1B4_3541 - FIG027190: Putative transmembrane protein, at 3,947,650 to 3,947,961
_3541
Pf1N1B4_3542 - Transcriptional regulator, AraC family, at 3,948,153 to 3,949,181
_3542
Group
Condition
Pf1N1B4
_3538
Pf1N1B4
_3539
Pf1N1B4
_3540
Pf1N1B4
_3541
Pf1N1B4
_3542
nitrogen source
nitrogen source nitrate 20mM
-3.8
+0.1
+0.3
-0.2
-0.3
anaerobic
N2E2wt with N1B4m denitrifying repA
-2.2
-0.1
-0.2
-1.1
-0.3
carbon source
carbon source Sucrose 5mM
-1.2
-0.1
+0.0
-0.7
-0.6
temperature
LB 37C
-1.7
-0.2
+0.0
-0.3
-0.5
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.4
-0.2
+0.4
-1.3
-0.1
carbon source
carbon source Sucrose 0.25mM
+0.0
+0.0
+0.2
-1.7
+0.2
anaerobic
Nitrate reduction
+0.3
-0.2
-0.2
-0.7
-0.5
nitrogen source
nitrate (N)
-0.6
-0.3
+0.4
-0.2
-0.3
carbon source
carbon source Sucrose 20mM
-0.8
+0.2
+0.3
-0.6
-0.1
carbon source
L-Arabinose (C)
-1.0
+0.2
+0.2
-0.3
-0.1
carbon source
carbon source Sucrose 1mM
-0.5
-0.2
+0.6
-0.6
-0.5
carbon source
L-Glutamic (C)
-1.2
-0.0
+0.4
-0.5
+0.3
stress
Aluminum chloride 2.5 mM
-0.6
-0.5
-0.0
+0.6
-0.4
carbon source
carbon source Sucrose 5mM
-0.6
+0.0
+0.1
-0.9
+0.5
nitrogen source
nitrogen source nitrite 0.1mM
+0.5
-0.0
+0.3
-1.8
+0.1
nitrogen source
Uridine (N)
+0.6
-0.4
+0.4
-0.5
-0.6
carbon source
carbon source Sucrose 0.5mM
-1.3
-0.0
+0.6
+0.2
+0.1
anaerobic
Nitrate reduction
-1.0
+0.1
+0.2
+0.8
-0.4
nitrogen source
L-Methionine (N)
-1.1
+0.1
-0.1
+0.6
+0.2
nitrogen source
Cytosine (N)
+0.6
-0.5
+0.3
-0.0
-0.7
nitrogen source
L-Leucine (N)
-1.4
-0.0
+0.5
+0.7
+0.0
anaerobic
Nitrate reduction
-1.0
+0.1
+0.5
-0.0
+0.4
nitrogen source
Ammonium chloride (N)
+0.7
-0.3
+0.3
+0.1
-0.5
stress
Chlorite 1 mM
+0.7
+0.3
+0.4
-0.8
-0.0
nitrogen source
Thymine (N)
+0.8
-0.3
+0.7
-0.1
-0.5
carbon source
carbon source Sucrose 1mM
-1.5
+0.3
+0.9
+0.8
+0.1
stress
Fusidic 0.125 mg/ml
-0.5
-0.4
+0.6
+0.8
+0.4
temperature
LB 37C
+0.4
+0.2
+0.7
+0.1
-0.5
stress
nitrate 100 mM
+0.5
+0.5
-0.3
+0.3
+0.4
stress
Cephalothin 2.5 mg/ml
+0.8
+0.3
+0.5
-0.2
+0.2
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