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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_3524 and Pf1N1B4_3525 overlap by 4 nucleotides
Pf1N1B4_3525 and Pf1N1B4_3526 are separated by 50 nucleotides
Pf1N1B4_3526 and Pf1N1B4_3527 are separated by 8 nucleotides
Pf1N1B4_3527 and Pf1N1B4_3528 are separated by 68 nucleotides
Pf1N1B4_3524 - FIG00955363: hypothetical protein, at 3,930,236 to 3,931,042
_3524
Pf1N1B4_3525 - hydrolase, alpha/beta fold family, at 3,931,039 to 3,931,893
_3525
Pf1N1B4_3526 - Glutathione S-transferase (EC 2.5.1.18), at 3,931,944 to 3,932,603
_3526
Pf1N1B4_3527 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit, at 3,932,612 to 3,933,418
_3527
Pf1N1B4_3528 - Putative membrane protein, at 3,933,487 to 3,934,542
_3528
Group
Condition
Pf1N1B4
_3524
Pf1N1B4
_3525
Pf1N1B4
_3526
Pf1N1B4
_3527
Pf1N1B4
_3528
temperature
LB 37C
-0.4
-3.5
-0.3
-0.4
-0.3
lb
LB
-0.3
-1.9
+0.1
-0.2
-0.4
stress
nitrate 100 mM
-0.4
-1.8
-0.1
-0.1
-0.2
nitrogen source
nitrogen source nitrate 20mM
-1.6
-0.2
-0.4
-0.1
-0.2
nitrogen source
nitrate (N)
-1.0
-0.7
-0.1
-0.3
-0.4
carbon source
D-Ribose (C)
-0.5
-1.1
-0.3
-0.4
-0.2
carbon source
L-Arabinose (C)
-1.3
-0.3
-0.2
-0.5
-0.1
carbon source
carbon source Sucrose 5mM
-0.4
-1.3
-0.4
-0.4
+0.1
carbon source
D,L-Lactate (C)
-0.1
-0.6
-0.4
-0.6
-0.8
pH
Minimal media pH9
+0.1
-0.7
-0.1
-0.3
-1.4
carbon source
L-Arabinose (C)
-0.9
-0.5
-0.1
-0.7
-0.1
pH
Minimal media pH9
-0.1
+0.5
+0.3
-1.1
-1.5
carbon source
carbon source Sucrose 1mM
-1.0
-0.5
-0.0
-0.8
+0.6
stress
Tetracycline 0.0004 mg/ml
-0.9
-1.1
+0.4
-0.3
+0.2
stress
Spectinomycin 0.05 mg/ml
+0.1
-1.3
+0.3
-0.8
-0.0
carbon source
carbon source Sucrose 1mM
-0.8
-1.3
-0.4
+0.2
+0.8
carbon source
D-Gluconic Acid (C)
-0.4
+0.2
+0.2
-0.6
-0.8
denitrifying
Nitrate reduction, replicate B
-0.3
-1.3
+0.1
-0.2
+0.6
denitrifying
Nitrate reduction, replicate C t3
-0.5
-0.5
+0.2
-0.5
+0.5
carbon source
L-Glutamine (C)
-0.7
+0.7
+0.3
-0.8
-0.2
carbon source
carbon source Sucrose 0.25mM
-0.8
+0.3
-0.4
-0.5
+0.8
carbon source
m-Inositol (C)
-1.0
+0.2
+0.7
-0.3
-0.1
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
-0.5
-0.8
+0.3
+0.1
+0.8
carbon source
D-Trehalose (C)
-1.0
+0.4
+0.6
+0.2
-0.2
stress
Cisplatin 0.006 mg/ml
-0.5
+1.1
+0.3
-0.0
-0.6
nitrogen source
nitrogen source nitrite 0.1mM
-1.0
+0.5
+0.5
+0.1
+0.2
stress
Chlorite 1 mM
+0.4
+0.6
+0.6
-0.5
+0.0
stress
Fusidic 0.125 mg/ml
-0.3
+0.8
+1.3
-0.6
+0.0
temperature
LB 37C
-0.1
+1.8
+0.3
-0.1
-0.1
lb
LB
+0.3
+0.9
+0.7
+0.4
-0.1
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