Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_3515 and Pf1N1B4_3516 are separated by 1 nucleotidesPf1N1B4_3516 and Pf1N1B4_3517 are separated by 61 nucleotidesPf1N1B4_3517 and Pf1N1B4_3518 are separated by 15 nucleotidesPf1N1B4_3518 and Pf1N1B4_3519 are separated by 31 nucleotides Pf1N1B4_3515 - FIG00953467: hypothetical protein, at 3,922,490 to 3,923,422 _3515 Pf1N1B4_3516 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 3,923,424 to 3,925,547 _3516 Pf1N1B4_3517 - hypothetical protein, at 3,925,609 to 3,925,827 _3517 Pf1N1B4_3518 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 3,925,843 to 3,926,769 _3518 Pf1N1B4_3519 - Lipase (EC 3.1.1.3), at 3,926,801 to 3,927,148 _3519
Group Condition Pf1N1B4_3515 Pf1N1B4_3516 Pf1N1B4_3517 Pf1N1B4_3518 Pf1N1B4_3519
carbon source carbon source Sucrose 0.25mM -0.4 -1.2 -0.8 -3.5 -0.3
pH Minimal media pH9 -0.0 -0.1 -1.3 -2.1 -2.1
pH Minimal media pH9 +0.2 +0.3 -0.1 -2.1 -3.6
carbon source carbon source Sucrose 0.5mM +0.3 +0.1 -0.9 -2.8 -0.7
nitrogen source nitrogen source Ammonium chloride 20mM +0.2 +0.2 -0.0 -4.3 +0.1
carbon source carbon source Sucrose 5mM +0.4 +0.5 -0.2 -4.3 -0.3
nitrogen source nitrogen source nitrite 0.1mM +0.3 -0.2 -0.1 -3.7 +0.2
carbon source carbon source Sucrose 0.25mM -0.7 -0.7 +0.6 -2.1 -0.4
carbon source carbon source Sucrose 1mM +0.4 +0.3 -0.6 -2.7 -0.3
nitrogen source nitrogen source nitrite 0.5mM +0.1 +0.2 +0.4 -2.6 -0.7
pH Minimal media pH7 +0.3 +0.3 -0.2 -2.9 +0.2
pH Minimal media pH6 -0.2 +0.2 -0.4 -2.3 +0.4
nitrogen source nitrogen source Ammonium chloride 20mM -0.1 +0.2 +0.6 -3.1 +0.2
carbon source D,L-Lactate (C) +0.2 +0.4 +0.1 -3.2 +0.3
carbon source D-Glucose (C) +0.0 +0.3 +0.3 -3.0 +0.2
nitrogen source L-Serine (N) +0.6 +0.6 -0.2 -2.8 -0.0
carbon source D-Gluconic Acid (C) +0.2 +0.3 -0.3 -2.5 +0.6
denitrifying Nitrate reduction, replicate A +0.4 +0.7 +0.2 -2.7 -0.0
carbon source D-Ribose (C) +0.2 +0.4 +0.1 -2.6 +0.4
nitrogen source nitrogen source nitrate 5mM +0.1 +0.3 +0.5 -2.4 +0.1
carbon source pyruvate (C) +0.5 +0.4 +0.0 -2.3 +0.6
carbon source D-Fructose (C) +0.5 +0.6 +0.3 -2.1 +0.4
carbon source acetate (C) +0.3 +0.5 +0.6 -2.2 +0.6
nitrogen source L-Arginine (N) +0.7 +0.8 +0.3 -1.7 -0.2
carbon source D-Galactose (C) +0.6 +0.6 +0.2 -1.8 +0.3
carbon source D-Galactose (C) +0.5 +0.8 -0.3 -1.9 +1.0
carbon source Putrescine (C) +0.6 +0.8 +0.6 -1.8 +0.2
carbon source L-Isoleucine (C) +0.7 +0.8 +0.3 -1.6 +0.1
carbon source D-Fructose (C) +0.7 +0.8 +0.2 -1.6 +0.4
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 +0.9 +0.9 +0.3 -2.0 +0.7
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