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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_3469 and Pf1N1B4_3470 are separated by 144 nucleotides
Pf1N1B4_3470 and Pf1N1B4_3471 are separated by 61 nucleotides
Pf1N1B4_3471 and Pf1N1B4_3472 are separated by 367 nucleotides
Pf1N1B4_3472 and Pf1N1B4_3473 are separated by 3 nucleotides
Pf1N1B4_3469 - Flagellar basal-body P-ring formation protein FlgA, at 3,875,088 to 3,875,786
_3469
Pf1N1B4_3470 - Chemotaxis protein CheV (EC 2.7.3.-), at 3,875,931 to 3,876,863
_3470
Pf1N1B4_3471 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,876,925 to 3,877,737
_3471
Pf1N1B4_3472 - Flagellar basal-body rod protein FlgB, at 3,878,105 to 3,878,512
_3472
Pf1N1B4_3473 - Flagellar basal-body rod protein FlgC, at 3,878,516 to 3,878,959
_3473
Group
Condition
Pf1N1B4
_3469
Pf1N1B4
_3470
Pf1N1B4
_3471
Pf1N1B4
_3472
Pf1N1B4
_3473
denitrifying
Nitrate reduction, replicate B t1
-0.5
-0.3
-0.4
-0.2
-1.2
denitrifying
Nitrate reduction, replicate B t2
-0.7
-0.1
-0.3
-0.8
-0.5
temperature
LB 37C
+0.2
-0.7
-0.2
-0.5
-0.5
nitrogen source
nitrogen source nitrite 0.1mM
-0.4
-0.7
-0.3
-0.2
+0.0
carbon source
carbon source Sucrose 0.25mM
-0.1
-0.3
+0.1
+0.1
-1.1
nitrogen source
Uridine (N)
-0.3
+0.5
-0.1
-0.1
-0.8
stress
Nalidixic 0.004 mg/ml
+0.2
-0.2
+0.1
-0.3
-0.6
stress
Aluminum chloride 2.5 mM
-0.2
-0.4
-0.2
-0.4
+0.3
carbon source
carbon source Sucrose 1mM
+0.4
-1.0
-0.3
-0.2
+0.4
stress
Choline Lysine 6 mM
+0.2
-0.5
-0.2
-0.4
+0.2
stress
1-ethyl-3-methylimidazolium chloride 80 mM
+0.3
-0.6
+0.2
-0.3
-0.0
nitrogen source
nitrogen source nitrite 1mM
+0.0
-0.5
-0.1
-0.3
+0.4
nitrogen source
nitrogen source nitrite 0.1mM
-0.2
+0.5
-0.2
-0.1
-0.4
pH
Minimal media pH9
-0.3
-0.4
+0.1
+0.4
-0.3
stress
Spectinomycin 0.05 mg/ml
+0.2
-0.8
+0.1
+0.1
-0.1
temperature
LB 37C
+0.0
-0.5
-0.5
+0.3
+0.3
carbon source
L-Alanine (C)
-0.2
-0.1
-0.2
-0.2
+0.5
stress
D-Cycloserine 0.1 mg/ml
-0.4
-0.1
-0.1
-0.2
+0.5
carbon source
L-Isoleucine (C)
-0.1
+0.4
-0.3
-0.4
+0.4
stress
Sisomicin 0.001 mg/ml
+0.5
-0.3
+0.1
-0.5
+0.1
carbon source
carbon source Sucrose 5mM
+0.3
-0.4
-0.4
-0.1
+0.5
carbon source
Putrescine (C)
+0.2
-0.1
-0.2
-0.4
+0.5
denitrifying
Nitrate reduction, replicate C t1
-0.4
+0.3
+0.5
-0.4
+0.3
anaerobic
Nitrate reduction
+0.1
+0.4
-0.1
-0.5
+0.5
denitrifying
Nitrate reduction, replicate C t3
-0.2
+0.4
+0.3
-0.2
+0.2
carbon source
carbon source Sucrose 1mM
-0.2
-0.2
+0.0
-0.2
+1.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.3
+0.5
+0.2
-0.4
+0.4
carbon source
octanoate (C)
-0.2
+0.4
+0.1
-0.2
+0.5
stress
Dimethyl Sulfoxide 6.5 vol%
-0.3
+0.4
+0.0
+0.2
+0.4
nitrogen source
Cytosine (N)
-0.2
+0.6
+0.2
+0.3
+0.1
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