Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_3426 and Pf1N1B4_3427 are separated by 969 nucleotidesPf1N1B4_3427 and Pf1N1B4_3428 are separated by 644 nucleotidesPf1N1B4_3428 and Pf1N1B4_3429 are separated by 189 nucleotidesPf1N1B4_3429 and Pf1N1B4_3430 are separated by 467 nucleotides Pf1N1B4_3426 - McrBC 5-methylcytosine restriction system component, at 3,816,823 to 3,818,124 _3426 Pf1N1B4_3427 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 3,819,094 to 3,820,344 _3427 Pf1N1B4_3428 - putative secreted protein, at 3,820,989 to 3,821,261 _3428 Pf1N1B4_3429 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit, at 3,821,451 to 3,821,714 _3429 Pf1N1B4_3430 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 3,822,182 to 3,824,137 _3430
Group Condition Pf1N1B4_3426 Pf1N1B4_3427 Pf1N1B4_3428 Pf1N1B4_3429 Pf1N1B4_3430
carbon source acetate (C) -0.2 N.D. N.D. -0.2 -2.4
carbon source acetate (C) -0.2 N.D. N.D. -0.1 -2.3
carbon source Carnitine Hydrochloride (C) +0.3 N.D. N.D. +0.1 -2.2
carbon source L-Leucine (C) +0.2 N.D. N.D. +0.2 -1.9
carbon source L-Citrulline (C) +0.1 N.D. N.D. +0.0 -1.5
carbon source Cytidine (C) +0.1 N.D. N.D. -0.0 -1.3
carbon source Uridine (C) +0.4 N.D. N.D. -0.3 -1.3
nitrogen source D-Glucosamine Hydrochloride (N) -0.5 N.D. N.D. -0.7 +0.1
carbon source carbon source Sucrose 1mM +0.4 N.D. N.D. -1.1 -0.4
carbon source L-Arginine (C) +0.0 N.D. N.D. -0.2 -0.7
temperature LB 37C -0.9 N.D. N.D. -0.1 +0.3
carbon source carbon source Sucrose 0.5mM +0.3 N.D. N.D. -0.4 -0.6
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -0.3 N.D. N.D. -0.6 +0.2
carbon source carbon source Sucrose 0.25mM +0.5 N.D. N.D. -0.7 -0.5
carbon source m-Inositol (C) +0.3 N.D. N.D. -0.1 -0.8
carbon source D-Galacturonic Acid (C) +0.2 N.D. N.D. -0.0 -0.8
carbon source carbon source Sucrose 1mM +0.6 N.D. N.D. -0.4 -0.6
temperature LB 37C +0.4 N.D. N.D. -0.7 +0.2
carbon source L-Valine (C) +0.5 N.D. N.D. +0.3 -0.8
denitrifying Nitrate reduction, replicate C t2 +0.5 N.D. N.D. -0.3 -0.2
nophagecontrol Time16-nophage +0.4 N.D. N.D. -0.4 +0.1
stress Doxycycline hyclate 0.0001 mg/ml +0.3 N.D. N.D. -0.4 +0.1
anaerobic Nitrate reduction +0.5 N.D. N.D. -0.3 -0.2
stress methylglyoxal 0.004 vol% -0.4 N.D. N.D. +0.5 +0.1
stress benzoic 0.58 mg/ml +0.5 N.D. N.D. -0.4 +0.1
carbon source pyruvate (C) +0.2 N.D. N.D. +0.3 -0.4
carbon source Glycerol (C) +0.5 N.D. N.D. +0.2 -0.3
nitrogen source nitrogen source nitrite 0.1mM +0.4 N.D. N.D. +0.5 -0.1
stress Sisomicin 0.001 mg/ml +0.4 N.D. N.D. +0.5 -0.1
stress Fusidic 0.125 mg/ml +0.5 N.D. N.D. +0.5 -0.1
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