Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_3413 and Pf1N1B4_3414 are separated by 6 nucleotidesPf1N1B4_3414 and Pf1N1B4_3415 are separated by 141 nucleotidesPf1N1B4_3415 and Pf1N1B4_3416 are separated by 215 nucleotidesPf1N1B4_3416 and Pf1N1B4_3417 are separated by 359 nucleotides Pf1N1B4_3413 - Transcriptional regulator, LysR family, at 3,803,774 to 3,804,652 _3413 Pf1N1B4_3414 - PROBABLE MEMBRANE PROTEIN, at 3,804,659 to 3,804,907 _3414 Pf1N1B4_3415 - Transcriptional regulator, TetR family, at 3,805,049 to 3,805,657 _3415 Pf1N1B4_3416 - Outer membrane protein romA, at 3,805,873 to 3,806,931 _3416 Pf1N1B4_3417 - FIG00964635: hypothetical protein, at 3,807,291 to 3,807,608 _3417
Group Condition Pf1N1B4_3413 Pf1N1B4_3414 Pf1N1B4_3415 Pf1N1B4_3416 Pf1N1B4_3417
carbon source carbon source Sucrose 0.5mM -4.3 N.D. -0.8 -1.3 N.D.
carbon source D-Lactate (C) -1.8 N.D. -0.8 -0.3 N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -2.3 N.D. -0.6 +0.2 N.D.
temperature LB 37C -1.3 N.D. -1.2 -0.0 N.D.
stress Cholin acetate 20 mM -2.2 N.D. -0.1 -0.1 N.D.
anaerobic N2E2wt with N1B4m denitrifying repB -1.9 N.D. -0.3 -0.1 N.D.
carbon source D-Lactate (C) -0.5 N.D. -1.0 -0.1 N.D.
nitrogen source nitrogen source nitrite 0.1mM -0.8 N.D. -0.6 -0.2 N.D.
stress copper (II) chloride 2.5 mM -1.2 N.D. -0.2 -0.2 N.D.
carbon source acetate (C) -1.2 N.D. +0.1 -0.5 N.D.
carbon source carbon source Sucrose 0.25mM -0.7 N.D. +0.3 -1.0 N.D.
stress 1-ethyl-3-methylimidazolium lysine 5 mM -1.3 N.D. -0.2 +0.2 N.D.
carbon source carbon source Sucrose 1mM -0.5 N.D. -0.6 +0.7 N.D.
stress Sisomicin 0.001 mg/ml -1.2 N.D. +1.1 -0.0 N.D.
carbon source L-Arginine (C) +0.6 N.D. +0.3 -0.7 N.D.
lb LB +0.8 N.D. +0.7 -0.9 N.D.
carbon source octanoate (C) +0.3 N.D. +1.0 -0.3 N.D.
stress Nalidixic 0.004 mg/ml -0.6 N.D. +1.6 +0.2 N.D.
stress Fusidic 0.0625 mg/ml -0.1 N.D. +1.7 -0.2 N.D.
stress Fusidic 0.125 mg/ml +0.2 N.D. +2.1 -0.9 N.D.
lb LB +1.2 N.D. -0.3 +0.6 N.D.
carbon source carbon source Sucrose 5mM +1.0 N.D. +0.1 +0.5 N.D.
denitrifying Nitrate reduction, replicate B t2 +1.0 N.D. +0.8 -0.1 N.D.
stress nitrite 10 mM +2.2 N.D. +0.0 -0.5 N.D.
anaerobic Nitrate reduction +1.3 N.D. +0.3 +0.2 N.D.
stress Chlorite 1 mM +1.5 N.D. +0.3 +0.0 N.D.
stress Benzethonium chloride 0.0125 mM +0.5 N.D. +1.0 +0.3 N.D.
anaerobic N2E2wt with N1B4m denitrifying repA +0.6 N.D. +0.8 +0.4 N.D.
stress Carbenicillin 2 mg/ml -0.3 N.D. +2.5 +0.5 N.D.
stress Doxycycline hyclate 0.0001 mg/ml +1.8 N.D. +2.4 -0.1 N.D.
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