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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_3340 and Pf1N1B4_3341 are separated by 15 nucleotides
Pf1N1B4_3341 and Pf1N1B4_3342 are separated by 515 nucleotides
Pf1N1B4_3342 and Pf1N1B4_3343 are separated by 166 nucleotides
Pf1N1B4_3343 and Pf1N1B4_3344 are separated by 180 nucleotides
Pf1N1B4_3340 - putative membrane protein, at 3,726,603 to 3,727,550
_3340
Pf1N1B4_3341 - Cyanate transport protein CynX, at 3,727,566 to 3,728,750
_3341
Pf1N1B4_3342 - glutamine synthetase family protein, at 3,729,266 to 3,730,648
_3342
Pf1N1B4_3343 - membrane protein, putative, at 3,730,815 to 3,732,464
_3343
Pf1N1B4_3344 - SAM-dependent methyltransferases, at 3,732,645 to 3,733,199
_3344
Group
Condition
Pf1N1B4
_3340
Pf1N1B4
_3341
Pf1N1B4
_3342
Pf1N1B4
_3343
Pf1N1B4
_3344
stress
Aluminum chloride 2.5 mM
-0.5
-0.6
-0.2
-1.3
N.D.
carbon source
carbon source Sucrose 0.25mM
-0.3
-0.6
-0.2
-1.2
N.D.
stress
Benzethonium chloride 0.0125 mM
-0.4
-0.5
-0.6
-0.1
N.D.
carbon source
L-Histidine (C)
-0.3
-0.9
-0.2
-0.1
N.D.
nitrogen source
Putrescine (N)
-0.6
-0.6
-0.2
-0.1
N.D.
carbon source
carbon source Sucrose 1mM
+0.2
+0.4
-1.1
-0.8
N.D.
stress
Rifampicin 0.004 mg/ml
-0.1
-1.0
+0.1
-0.3
N.D.
carbon source
L-Asparagine (C)
-0.5
-0.2
-0.4
-0.3
N.D.
nitrogen source
Cytosine (N)
-0.4
+0.1
-0.3
-0.6
N.D.
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
+0.0
-0.9
-0.2
-0.2
N.D.
pH
Minimal media pH9
-0.4
+0.0
-0.3
-0.5
N.D.
temperature
LB 37C
-0.4
+0.1
-0.8
-0.1
N.D.
carbon source
m-Inositol (C)
-0.6
-0.2
+0.0
-0.4
N.D.
carbon source
L-Leucine (C)
-0.3
+0.0
-0.2
-0.6
N.D.
carbon source
carbon source Sucrose 5mM
+0.1
-1.0
+0.2
-0.2
N.D.
carbon source
L-Malic (C)
-0.4
-0.3
+0.1
-0.3
N.D.
stress
Chloride 300 mM
-0.5
+0.1
-0.4
-0.1
N.D.
carbon source
D-Galacturonic Acid (C)
-0.4
+0.2
-0.2
-0.4
N.D.
nitrogen source
nitrogen source nitrite 0.1mM
-0.2
+0.2
-0.1
-0.6
N.D.
stress
Carbenicillin 2 mg/ml
-0.6
-0.5
+0.1
+0.3
N.D.
nitrogen source
Thymine (N)
-0.5
+0.2
+0.0
-0.4
N.D.
lb
LB
-0.4
-0.3
+0.3
-0.0
N.D.
carbon source
carbon source Sucrose 0.25mM
+0.5
+0.2
-0.6
-0.5
N.D.
lb
LB
-0.1
-0.7
+0.1
+0.3
N.D.
nitrogen source
nitrogen source nitrite 0.1mM
+0.5
-0.0
-0.2
-0.5
N.D.
anaerobic
Nitrate reduction
-0.4
+0.5
+0.3
-0.2
N.D.
stress
Paraquat dichloride 0.016 mg/mL
+0.3
-0.4
-0.1
+0.3
N.D.
stress
Fusidic 0.125 mg/ml
+0.2
-0.6
+0.3
+0.6
N.D.
denitrifying
Nitrate reduction, replicate B
+0.2
+0.4
-0.3
+0.2
N.D.
stress
Doxycycline hyclate 0.0001 mg/ml
-0.2
-0.1
+0.6
+0.6
N.D.
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