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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_3280 and Pf1N1B4_3281 are separated by 202 nucleotides
Pf1N1B4_3281 and Pf1N1B4_3282 are separated by 126 nucleotides
Pf1N1B4_3282 and Pf1N1B4_3283 are separated by 389 nucleotides
Pf1N1B4_3283 and Pf1N1B4_3284 are separated by 56 nucleotides
Pf1N1B4_3280 - Prophage Lp2 protein 6, at 3,667,401 to 3,668,486
_3280
Pf1N1B4_3281 - AidA, at 3,668,689 to 3,669,228
_3281
Pf1N1B4_3282 - AidA, at 3,669,355 to 3,669,858
_3282
Pf1N1B4_3283 - Trans-aconitate 2-methyltransferase (EC 2.1.1.144), at 3,670,248 to 3,671,018
_3283
Pf1N1B4_3284 - Antitoxin 1, at 3,671,075 to 3,671,482
_3284
Group
Condition
Pf1N1B4
_3280
Pf1N1B4
_3281
Pf1N1B4
_3282
Pf1N1B4
_3283
Pf1N1B4
_3284
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
-0.2
-2.1
+0.1
-0.0
+0.2
denitrifying
Nitrate reduction, replicate A
-0.1
-2.1
+0.3
+0.2
-0.2
denitrifying
Nitrate reduction, replicate B
+0.1
-1.8
+0.5
-0.1
-0.6
denitrifying
Nitrate reduction, replicate C
-0.2
-2.1
+0.1
+0.3
+0.1
carbon source
carbon source Sucrose 1mM
-0.1
-0.6
+0.0
-0.2
-0.9
nitrogen source
nitrogen source nitrite 1mM
+0.3
-0.8
+0.3
+0.0
-1.7
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
+0.1
-0.7
-0.3
+0.0
-0.9
carbon source
carbon source Sucrose 0.5mM
-0.3
-0.1
-0.0
+0.3
-1.5
denitrifying
Nitrate reduction, replicate C t1
+0.1
-1.6
-0.2
-0.0
+0.2
denitrifying
Nitrate reduction, replicate A t2
+0.4
-1.7
+0.1
+0.1
-0.1
temperature
LB 37C
-0.4
+0.2
+0.6
-0.7
-0.9
anaerobic
Nitrate reduction
+0.3
-0.5
+0.1
-0.2
-1.0
carbon source
carbon source Sucrose 0.25mM
-0.2
+1.1
-0.3
+0.1
-1.9
denitrifying
Nitrate reduction, replicate C t3
+0.4
-1.8
-0.2
+0.1
+0.3
nitrogen source
nitrogen source nitrate 20mM
-0.2
-0.8
+0.1
+0.1
-0.2
nitrogen source
nitrogen source nitrite 0.5mM
+0.5
-0.9
-0.0
+0.1
-0.4
carbon source
L-Arabinose (C)
+0.3
-0.3
+0.0
+0.0
-0.8
carbon source
carbon source Sucrose 5mM
+0.4
+0.1
-0.7
+0.0
-0.4
denitrifying
Nitrate reduction, replicate C t2
+0.1
-0.9
-0.2
+0.1
+0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-0.6
-0.5
+0.2
+0.6
stress
sodium fluoride 12.5 mM
+0.3
-0.7
-0.3
+0.0
+0.3
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.2
+0.4
-0.4
+0.0
-0.5
carbon source
carbon source Sucrose 0.25mM
+0.2
+0.6
+0.0
+0.4
-1.3
stress
Aluminum chloride 2.5 mM
+0.3
-0.7
+0.2
+0.1
+0.2
stress
Spectinomycin 0.025 mg/ml
-0.4
-0.2
+0.2
-0.1
+0.5
stress
Benzethonium chloride 0.0125 mM
-0.1
+0.0
+0.6
+0.2
-0.5
nitrogen source
Ammonium chloride (N)
+0.3
+0.7
-0.1
-0.1
-0.3
stress
Fusidic 0.0625 mg/ml
+0.2
-0.3
+0.3
+0.3
+0.2
nitrogen source
Uridine (N)
+0.4
+0.9
-0.2
+0.1
-0.4
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
+0.2
+0.3
+0.4
-0.2
+0.4
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