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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_2965 and Pf1N1B4_2966 are separated by 313 nucleotides
Pf1N1B4_2966 and Pf1N1B4_2967 are separated by 145 nucleotides
Pf1N1B4_2967 and Pf1N1B4_2968 are separated by 24 nucleotides
Pf1N1B4_2968 and Pf1N1B4_2969 are separated by 90 nucleotides
Pf1N1B4_2965 - hypothetical protein, at 3,326,471 to 3,327,412
_2965
Pf1N1B4_2966 - FIG00958649: hypothetical protein, at 3,327,726 to 3,328,160
_2966
Pf1N1B4_2967 - Alpha/beta hydrolase, at 3,328,306 to 3,328,938
_2967
Pf1N1B4_2968 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 3,328,963 to 3,330,318
_2968
Pf1N1B4_2969 - ATPase, AFG1 family, at 3,330,409 to 3,331,503
_2969
Group
Condition
Pf1N1B4
_2965
Pf1N1B4
_2966
Pf1N1B4
_2967
Pf1N1B4
_2968
Pf1N1B4
_2969
stress
nitrite 10 mM
N.D.
N.D.
-0.7
N.D.
-1.2
stress
nitrite 10 mM
N.D.
N.D.
-0.3
N.D.
-1.5
carbon source
L-Citrulline (C)
N.D.
N.D.
+0.2
N.D.
-2.0
nitrogen source
L-Serine (N)
N.D.
N.D.
+0.2
N.D.
-1.8
carbon source
L-Malic (C)
N.D.
N.D.
-0.5
N.D.
-0.9
carbon source
Fumarate (C)
N.D.
N.D.
-0.2
N.D.
-1.2
carbon source
L-Glutamic (C)
N.D.
N.D.
-0.1
N.D.
-1.3
carbon source
acetate (C)
N.D.
N.D.
+0.0
N.D.
-1.3
carbon source
Fumarate (C)
N.D.
N.D.
-0.1
N.D.
-1.2
carbon source
acetate (C)
N.D.
N.D.
-0.1
N.D.
-1.1
carbon source
Putrescine (C)
N.D.
N.D.
+0.2
N.D.
-1.4
nitrogen source
L-Valine (N)
N.D.
N.D.
-0.7
N.D.
-0.5
carbon source
Tween 20 (C)
N.D.
N.D.
+0.1
N.D.
-1.1
carbon source
L-Arginine (C)
N.D.
N.D.
+0.6
N.D.
-1.4
carbon source
octanoate (C)
N.D.
N.D.
+0.4
N.D.
-0.9
carbon source
D-Lactate (C)
N.D.
N.D.
-0.6
N.D.
+0.8
temperature
LB 37C
N.D.
N.D.
-0.6
N.D.
+1.2
temperature
LB 37C
N.D.
N.D.
+0.1
N.D.
+1.1
carbon source
carbon source Sucrose 0.25mM
N.D.
N.D.
+0.2
N.D.
+1.0
stress
1-ethyl-3-methylimidazolium chloride 80 mM
N.D.
N.D.
+0.6
N.D.
+0.6
stress
Doxycycline hyclate 0.0001 mg/ml
N.D.
N.D.
+0.3
N.D.
+0.9
stress
Fusidic 0.0625 mg/ml
N.D.
N.D.
+0.2
N.D.
+1.1
carbon source
m-Inositol (C)
N.D.
N.D.
+0.1
N.D.
+1.2
carbon source
Glycerol (C)
N.D.
N.D.
+0.3
N.D.
+1.1
stress
Sisomicin 0.001 mg/ml
N.D.
N.D.
+0.4
N.D.
+1.1
stress
methylglyoxal 0.008 vol%
N.D.
N.D.
+0.4
N.D.
+1.1
stress
Choline Lysine 6 mM
N.D.
N.D.
+0.4
N.D.
+1.5
pH
Minimal media pH9
N.D.
N.D.
+0.1
N.D.
+1.9
stress
Fusidic 0.125 mg/ml
N.D.
N.D.
+0.8
N.D.
+1.3
pH
Minimal media pH9
N.D.
N.D.
+0.5
N.D.
+2.0
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