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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_2958 and Pf1N1B4_2959 are separated by 334 nucleotides
Pf1N1B4_2959 and Pf1N1B4_2960 are separated by 28 nucleotides
Pf1N1B4_2960 and Pf1N1B4_2961 are separated by 315 nucleotides
Pf1N1B4_2961 and Pf1N1B4_2962 are separated by 113 nucleotides
Pf1N1B4_2958 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 3,311,821 to 3,312,210
_2958
Pf1N1B4_2959 - FIG067310: hypothetical protein, at 3,312,545 to 3,314,434
_2959
Pf1N1B4_2960 - FIG002188: hypothetical protein, at 3,314,463 to 3,315,827
_2960
Pf1N1B4_2961 - Transcriptional regulator, LuxR family, at 3,316,143 to 3,318,881
_2961
Pf1N1B4_2962 - Alkaline phosphatase (EC 3.1.3.1), at 3,318,995 to 3,324,145
_2962
Group
Condition
Pf1N1B4
_2958
Pf1N1B4
_2959
Pf1N1B4
_2960
Pf1N1B4
_2961
Pf1N1B4
_2962
carbon source
Tween 20 (C)
+0.5
-2.6
-2.7
-1.5
-0.1
stress
Benzethonium chloride 0.0125 mM
-1.1
-1.6
-0.0
-0.4
-0.1
carbon source
a-Ketoglutaric (C)
-1.7
-0.7
+0.2
-0.3
+0.0
stress
Thallium(I) acetate 0.008 mg/ml
-2.0
-0.1
+0.0
-0.3
+0.0
temperature
LB 37C
-1.0
-1.1
+0.0
-0.2
+0.1
nitrogen source
nitrogen source nitrite 0.1mM
-0.4
-1.1
-0.0
-0.3
-0.2
stress
copper (II) chloride 2.5 mM
-0.9
-0.4
-0.3
-0.5
+0.2
stress
Cisplatin 0.006 mg/ml
+0.2
-1.9
-0.1
-0.0
-0.1
stress
1-ethyl-3-methylimidazolium chloride 80 mM
+0.2
-2.1
+0.0
-0.1
+0.2
stress
Gentamicin 0.001 mg/ml
-0.8
-0.9
-0.0
-0.2
+0.2
stress
Choline chloride 200 mM
+0.4
-1.7
-0.0
-0.5
+0.2
carbon source
carbon source Sucrose 1mM
-0.8
-0.9
+0.0
+0.2
+0.1
pH
Minimal media pH9
-1.4
-0.7
+0.3
+0.4
+0.1
carbon source
L-Lactate (C)
-1.4
+0.3
+0.1
-0.1
+0.1
carbon source
a-Ketoglutaric (C)
-1.3
+0.3
+0.2
-0.3
+0.1
stress
nitrate 100 mM
+1.3
-2.1
+0.1
-0.2
+0.0
pH
Minimal media pH9
-1.1
-0.2
+0.4
+0.2
-0.1
carbon source
carbon source Sucrose 0.25mM
+0.9
-0.9
-0.4
-0.6
+0.1
stress
Cisplatin 0.006 mg/ml
+1.2
-1.8
-0.0
-0.1
+0.0
stress
Chloride 300 mM
+1.2
-1.6
-0.1
-0.1
-0.1
carbon source
m-Inositol (C)
+1.1
-0.9
-0.2
-0.5
-0.2
stress
Carbenicillin 2 mg/ml
+0.7
-1.5
+0.1
+0.1
+0.1
denitrifying
Nitrate reduction, replicate A t1
-1.1
+0.6
+0.2
+0.1
+0.1
carbon source
carbon source Sucrose 5mM
+0.9
-1.0
+0.0
-0.3
+0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.7
-0.9
+0.2
+0.2
-0.1
carbon source
Cytidine (C)
+1.1
-0.5
-0.2
-0.1
-0.1
denitrifying
Nitrate reduction, replicate A t2
-1.2
+0.8
+0.4
+0.3
+0.1
carbon source
carbon source Sucrose 1mM
+1.4
-0.7
-0.0
+0.2
+0.1
stress
nitrite 10 mM
+1.2
-0.6
+0.1
+0.1
+0.2
stress
D-Cycloserine 0.1 mg/ml
+1.5
-0.1
-0.3
+0.4
-0.1
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