Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_2838 and Pf1N1B4_2839 overlap by 4 nucleotidesPf1N1B4_2839 and Pf1N1B4_2840 are separated by 8 nucleotidesPf1N1B4_2840 and Pf1N1B4_2841 are separated by 1 nucleotidesPf1N1B4_2841 and Pf1N1B4_2842 are separated by 2 nucleotides Pf1N1B4_2838 - FIG003276: zinc-binding protein, at 3,183,580 to 3,183,780 _2838 Pf1N1B4_2839 - Dephospho-CoA kinase (EC 2.7.1.24), at 3,183,777 to 3,184,388 _2839 Pf1N1B4_2840 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 3,184,397 to 3,185,269 _2840 Pf1N1B4_2841 - Type IV fimbrial assembly protein PilC, at 3,185,271 to 3,186,488 _2841 Pf1N1B4_2842 - Type IV fimbrial assembly, ATPase PilB, at 3,186,491 to 3,188,191 _2842
Group Condition Pf1N1B4_2838 Pf1N1B4_2839 Pf1N1B4_2840 Pf1N1B4_2841 Pf1N1B4_2842
carbon source carbon source Sucrose 1mM N.D. N.D. -1.2 -0.5 -0.2
denitrifying Nitrate reduction, replicate C t3 N.D. N.D. -1.1 -0.3 -0.2
denitrifying Nitrate reduction, replicate C t2 N.D. N.D. -1.1 -0.2 -0.3
denitrifying Nitrate reduction, replicate A t2 N.D. N.D. -1.1 -0.2 -0.1
carbon source carbon source Sucrose 0.5mM N.D. N.D. -1.0 -0.1 -0.2
denitrifying Nitrate reduction, replicate C N.D. N.D. -1.2 -0.0 -0.1
denitrifying Nitrate reduction, replicate B N.D. N.D. -0.9 +0.0 -0.4
denitrifying Nitrate reduction, replicate A N.D. N.D. -1.3 +0.1 +0.0
denitrifying Nitrate reduction, replicate B t2 N.D. N.D. -0.7 -0.2 -0.2
nitrogen source nitrogen source nitrite 0.1mM N.D. N.D. -0.6 -0.3 -0.1
temperature LB 37C N.D. N.D. -0.9 -0.2 +0.1
stress Aluminum chloride 2.5 mM N.D. N.D. -0.6 -0.1 -0.2
denitrifying Nitrate reduction, replicate C t1 N.D. N.D. -0.6 -0.3 -0.1
anaerobic Nitrate reduction N.D. N.D. -0.6 -0.3 -0.0
nitrogen source Uridine (N) N.D. N.D. -0.7 -0.2 -0.0
stress Rifampicin 0.004 mg/ml N.D. N.D. -0.2 -0.4 -0.2
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 N.D. N.D. -0.6 +0.1 -0.2
nitrogen source Putrescine (N) N.D. N.D. -0.5 -0.2 -0.0
carbon source D-Trehalose (C) N.D. N.D. -0.5 -0.1 -0.1
temperature LB 20C N.D. N.D. -0.6 -0.1 +0.1
carbon source carbon source Sucrose 5mM N.D. N.D. -0.5 -0.2 +0.2
stress Tetracycline 0.0004 mg/ml N.D. N.D. +0.3 -0.2 -0.3
stress Bacitracin 2 mg/ml N.D. N.D. +0.4 -0.0 -0.3
stress nitrate 100 mM N.D. N.D. +0.4 -0.2 -0.1
nitrogen source nitrogen source nitrite 1mM N.D. N.D. +0.5 -0.2 +0.0
nitrogen source nitrogen source nitrite 0.1mM N.D. N.D. +0.5 +0.0 -0.2
stress Fusidic 0.0625 mg/ml N.D. N.D. +0.4 -0.2 +0.3
carbon source D-Ribose (C) N.D. N.D. +0.7 -0.1 +0.0
stress Chloride 300 mM N.D. N.D. +0.4 +0.3 -0.1
carbon source carbon source Sucrose 0.25mM N.D. N.D. +0.7 +0.2 +0.0
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