Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_2741 and Pf1N1B4_2742 are separated by 141 nucleotidesPf1N1B4_2742 and Pf1N1B4_2743 overlap by 1 nucleotidesPf1N1B4_2743 and Pf1N1B4_2744 are separated by 235 nucleotidesPf1N1B4_2744 and Pf1N1B4_2745 are separated by 135 nucleotides Pf1N1B4_2741 - Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family, at 3,079,807 to 3,080,400 _2741 Pf1N1B4_2742 - putative exported protein, at 3,080,542 to 3,081,501 _2742 Pf1N1B4_2743 - YpfJ protein, zinc metalloprotease superfamily, at 3,081,501 to 3,082,394 _2743 Pf1N1B4_2744 - Transcriptional regulator, IclR family, at 3,082,630 to 3,083,406 _2744 Pf1N1B4_2745 - membrane protein, putative, at 3,083,542 to 3,084,483 _2745
Group Condition Pf1N1B4_2741 Pf1N1B4_2742 Pf1N1B4_2743 Pf1N1B4_2744 Pf1N1B4_2745
temperature LB 37C -0.5 +0.2 -0.1 -0.4 -0.6
stress Choline chloride 200 mM -0.8 -0.2 -0.2 -0.2 -0.1
carbon source L-Malic (C) -0.5 +0.2 -0.2 -0.6 -0.2
nitrogen source nitrogen source nitrite 0.1mM -0.1 +0.0 +0.1 -1.1 -0.2
carbon source carbon source Sucrose 5mM -0.6 +0.3 -0.1 +0.1 -0.7
stress Fusidic 0.0625 mg/ml +0.2 -0.0 -0.1 -0.8 -0.3
anaerobic Nitrate reduction -0.9 +0.1 +0.4 -0.3 -0.3
carbon source carbon source Sucrose 5mM -1.5 +0.3 +0.4 -0.0 +0.2
stress Fusidic 0.125 mg/ml +0.4 -0.3 -0.0 -0.4 -0.3
pH Minimal media pH9 -0.3 +0.3 +0.3 -0.9 +0.1
carbon source carbon source Sucrose 1mM -0.2 -0.2 +0.4 -0.8 +0.4
anaerobic Nitrate reduction -0.3 -0.1 +0.1 +0.4 -0.4
anaerobic Nitrate reduction -0.9 +0.0 +0.4 +0.4 -0.2
nitrogen source Adenine (N) -0.9 +0.1 +0.4 +0.1 +0.1
denitrifying Nitrate reduction, replicate B -0.6 +0.1 -0.3 +0.1 +0.4
denitrifying Nitrate reduction, replicate A -0.5 +0.4 +0.2 -0.1 -0.1
carbon source L-Arginine (C) +0.2 +0.3 +0.1 -0.7 -0.0
pH Minimal media pH7 -0.6 +0.1 +0.5 -0.1 +0.0
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.9 -0.2 -0.0 -0.4 -0.2
carbon source L-Glutamic (C) +0.2 +0.3 +0.3 -0.5 -0.2
denitrifying Nitrate reduction, replicate C t3 -0.6 +0.0 +0.5 +0.2 -0.1
carbon source carbon source Sucrose 0.25mM -0.7 +0.5 +0.3 +0.4 -0.2
nitrogen source D-Alanine (N) +0.1 +0.4 +0.2 -0.5 +0.1
carbon source carbon source Sucrose 1mM +0.5 -0.3 +0.6 -0.4 +0.3
carbon source carbon source Sucrose 0.25mM +0.4 +0.4 +0.2 -0.5 +0.3
denitrifying Nitrate reduction, replicate A t1 -0.3 +0.4 +0.5 +0.4 -0.1
nitrogen source Cytosine (N) -0.2 +0.1 +0.5 +0.4 +0.4
stress Cobalt chloride 0.3125 mM +1.1 -0.1 +0.3 +0.2 -0.0
carbon source D-Galactose (C) +0.8 +0.0 +0.3 +0.3 +0.1
carbon source a-Ketoglutaric (C) +0.5 +0.1 +0.3 +0.4 +0.2
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