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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_2728 and Pf1N1B4_2729 are separated by 141 nucleotides
Pf1N1B4_2729 and Pf1N1B4_2730 are separated by 88 nucleotides
Pf1N1B4_2730 and Pf1N1B4_2731 are separated by 178 nucleotides
Pf1N1B4_2731 and Pf1N1B4_2732 are separated by 142 nucleotides
Pf1N1B4_2728 - ATP-dependent helicase HrpB, at 3,065,847 to 3,068,363
_2728
Pf1N1B4_2729 - endonuclease/exonuclease/phosphatase family protein, at 3,068,505 to 3,069,587
_2729
Pf1N1B4_2730 - FIG00958173: hypothetical protein, at 3,069,676 to 3,070,350
_2730
Pf1N1B4_2731 - Uncharacterized protein conserved in bacteria, at 3,070,529 to 3,071,281
_2731
Pf1N1B4_2732 - FIG00954572: hypothetical protein, at 3,071,424 to 3,071,903
_2732
Group
Condition
Pf1N1B4
_2728
Pf1N1B4
_2729
Pf1N1B4
_2730
Pf1N1B4
_2731
Pf1N1B4
_2732
stress
D-Cycloserine 0.1 mg/ml
-0.1
-0.6
-0.2
-0.5
-0.4
temperature
LB 37C
-0.6
-0.4
+0.0
-0.6
+0.2
nitrogen source
Thymine (N)
-0.3
-0.3
+0.2
-1.1
-0.1
nitrogen source
Cytidine (N)
+0.0
-0.5
+0.1
-0.8
-0.0
stress
Benzethonium chloride 0.0125 mM
-0.4
-0.0
+0.2
-0.3
-0.5
carbon source
carbon source Sucrose 1mM
+0.2
-0.2
-0.1
+0.0
-0.9
stress
Sisomicin 0.001 mg/ml
-0.1
+0.3
-0.0
-1.3
+0.2
nitrogen source
Carnitine Hydrochloride (N)
-0.4
-0.1
+0.4
-0.7
-0.0
nitrogen source
Ammonium chloride (N)
+0.1
-0.6
-0.1
-0.4
+0.2
carbon source
carbon source Sucrose 0.5mM
+0.3
+0.1
-0.4
-0.2
-0.6
temperature
LB 37C
+0.2
-0.5
-0.1
-0.5
+0.3
stress
Cholin acetate 10 mM
+0.1
-0.0
+0.3
-1.0
+0.2
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
+0.3
-0.2
+0.1
-0.5
+0.1
stress
Dimethyl Sulfoxide 5 vol%
+0.2
-0.4
+0.1
-0.4
+0.4
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.4
+0.1
+0.1
+0.8
-0.6
anaerobic
Nitrate reduction
+0.4
+0.5
-0.5
+0.0
-0.3
lb
LB
-0.0
-0.4
+0.2
+0.7
-0.2
stress
Cisplatin 0.006 mg/ml
+0.1
-0.0
+0.3
+0.6
-0.7
carbon source
carbon source Sucrose 0.25mM
-0.1
+0.6
-0.1
+0.6
-0.7
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.1
-0.5
+0.3
+0.5
+0.2
denitrifying
Nitrate reduction, replicate C t1
+0.3
-0.3
-0.2
+0.4
+0.4
stress
Cholin acetate 20 mM
+0.5
+0.2
-0.2
+0.6
-0.3
stress
Cisplatin 0.006 mg/ml
-0.2
+0.2
-0.1
+1.0
-0.1
pH
Minimal media pH9
-0.2
+0.2
+0.1
+0.7
+0.4
stress
sodium fluoride 12.5 mM
+0.5
+0.1
-0.0
+0.6
+0.2
nitrogen source
L-Methionine (N)
+0.4
+0.0
+0.3
+0.6
-0.0
anaerobic
N2E2wt with N1B4m denitrifying repA
+0.3
+0.4
-0.1
+0.6
+0.1
stress
Carbenicillin 2 mg/ml
-0.1
+0.1
+0.1
+0.9
+0.5
carbon source
Carnitine Hydrochloride (C)
+0.0
-0.1
+1.1
+0.0
+0.4
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
-0.3
+0.4
+0.6
+0.9
+0.0
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