Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_2674 and Pf1N1B4_2675 overlap by 15 nucleotidesPf1N1B4_2675 and Pf1N1B4_2676 are separated by 187 nucleotidesPf1N1B4_2676 and Pf1N1B4_2677 overlap by 4 nucleotidesPf1N1B4_2677 and Pf1N1B4_2678 overlap by 8 nucleotides Pf1N1B4_2674 - hypothetical protein, at 3,012,062 to 3,012,424 _2674 Pf1N1B4_2675 - Nitrogen regulation protein NR(I), at 3,012,410 to 3,014,323 _2675 Pf1N1B4_2676 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 3,014,511 to 3,015,860 _2676 Pf1N1B4_2677 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-), at 3,015,857 to 3,016,489 _2677 Pf1N1B4_2678 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 3,016,482 to 3,016,766 _2678
Group Condition Pf1N1B4_2674 Pf1N1B4_2675 Pf1N1B4_2676 Pf1N1B4_2677 Pf1N1B4_2678
carbon source acetate (C) -3.0 +0.1 N.D. N.D. N.D.
stress acetate 20 mM -2.3 +0.1 N.D. N.D. N.D.
carbon source carbon source Sucrose 5mM -1.8 -0.0 N.D. N.D. N.D.
carbon source carbon source Sucrose 1mM -1.9 +0.1 N.D. N.D. N.D.
denitrifying Nitrate reduction, replicate B t1 -1.9 +0.2 N.D. N.D. N.D.
nitrogen source Thymine (N) -2.0 +0.3 N.D. N.D. N.D.
lb LB -1.4 -0.3 N.D. N.D. N.D.
carbon source carbon source Sucrose 0.25mM -1.5 -0.1 N.D. N.D. N.D.
carbon source D-Gluconic Acid (C) -1.5 -0.0 N.D. N.D. N.D.
denitrifying Nitrate reduction, replicate B t2 -1.5 +0.0 N.D. N.D. N.D.
stress Cholin acetate 10 mM -1.6 +0.1 N.D. N.D. N.D.
carbon source L-Lactate (C) -1.5 +0.1 N.D. N.D. N.D.
carbon source pyruvate (C) -1.3 +0.0 N.D. N.D. N.D.
stress methylglyoxal 0.008 vol% -1.2 -0.1 N.D. N.D. N.D.
stress D-Cycloserine 0.1 mg/ml -1.3 +0.1 N.D. N.D. N.D.
anaerobic N2E2wt with N1B4m denitrifying repB -1.4 +0.2 N.D. N.D. N.D.
stress Nalidixic 0.004 mg/ml -1.3 +0.1 N.D. N.D. N.D.
anaerobic N2E2wt with N1B4m denitrifying repA -0.8 -0.3 N.D. N.D. N.D.
denitrifying Nitrate reduction, replicate A -1.0 -0.1 N.D. N.D. N.D.
nitrogen source Cytidine (N) -1.3 +0.2 N.D. N.D. N.D.
stress Choline Lysine 6 mM -0.8 -0.2 N.D. N.D. N.D.
nitrogen source Uridine (N) -1.1 +0.1 N.D. N.D. N.D.
lb LB -1.1 +0.1 N.D. N.D. N.D.
pH Minimal media pH9 -1.1 +0.4 N.D. N.D. N.D.
nitrogen source nitrogen source Ammonium chloride 20mM -0.9 +0.3 N.D. N.D. N.D.
carbon source Carnitine Hydrochloride (C) +0.7 -0.6 N.D. N.D. N.D.
nitrogen source nitrogen source nitrate 20mM +0.8 -0.2 N.D. N.D. N.D.
carbon source carbon source Sucrose 1mM +0.9 -0.1 N.D. N.D. N.D.
stress Thallium(I) acetate 0.008 mg/ml +1.0 +0.1 N.D. N.D. N.D.
carbon source carbon source Sucrose 5mM +0.8 +0.6 N.D. N.D. N.D.
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