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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_2626 and Pf1N1B4_2627 are separated by 12 nucleotides
Pf1N1B4_2627 and Pf1N1B4_2628 overlap by 17 nucleotides
Pf1N1B4_2628 and Pf1N1B4_2629 are separated by 17 nucleotides
Pf1N1B4_2629 and Pf1N1B4_2630 overlap by 4 nucleotides
Pf1N1B4_2626 - Biotin carboxylase (EC 6.3.4.14), at 2,964,796 to 2,965,881
_2626
Pf1N1B4_2627 - Prolyl oligopeptidase family protein, at 2,965,894 to 2,966,652
_2627
Pf1N1B4_2628 - hypothetical protein, at 2,966,636 to 2,966,764
_2628
Pf1N1B4_2629 - Inner membrane protein YbhQ, at 2,966,782 to 2,967,768
_2629
Pf1N1B4_2630 - Cardiolipin synthetase (EC 2.7.8.-), at 2,967,765 to 2,969,051
_2630
Group
Condition
Pf1N1B4
_2626
Pf1N1B4
_2627
Pf1N1B4
_2628
Pf1N1B4
_2629
Pf1N1B4
_2630
stress
Gentamicin 0.001 mg/ml
-0.1
-0.7
N.D.
-0.1
-0.3
carbon source
a-Ketoglutaric (C)
-0.4
-0.4
N.D.
+0.0
-0.1
carbon source
D,L-Lactate (C)
-0.0
-0.3
N.D.
+0.1
-0.4
lb
LB
+0.1
-0.4
N.D.
-0.3
-0.1
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
-0.3
-0.3
N.D.
-0.1
+0.1
lb
LB
+0.0
-0.2
N.D.
+0.2
-0.4
carbon source
pyruvate (C)
+0.2
-0.2
N.D.
-0.2
-0.2
stress
Fusidic 0.125 mg/ml
-0.2
-0.2
N.D.
+0.2
-0.2
stress
Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.2
N.D.
-0.2
-0.2
carbon source
carbon source Sucrose 0.5mM
+0.2
-0.1
N.D.
-0.6
+0.2
stress
Choline Lysine 6 mM
+0.5
-0.4
N.D.
-0.1
-0.2
stress
Carbenicillin 2 mg/ml
-0.2
-0.2
N.D.
+0.3
-0.1
carbon source
carbon source Sucrose 0.25mM
+0.0
-0.5
N.D.
+0.3
+0.1
stress
Bacitracin 2 mg/ml
+0.2
-0.6
N.D.
+0.2
+0.0
carbon source
carbon source Sucrose 5mM
+0.2
+0.2
N.D.
-0.7
+0.2
carbon source
D-Glucose (C)
+0.1
-0.2
N.D.
+0.3
-0.2
stress
Chloride 300 mM
-0.0
+0.3
N.D.
+0.1
-0.5
carbon source
carbon source Sucrose 1mM
+0.1
+0.3
N.D.
-0.6
+0.2
nitrogen source
Putrescine (N)
-0.1
+0.2
N.D.
+0.2
-0.3
lb
LB
+0.2
+0.0
N.D.
+0.3
-0.3
nitrogen source
Ammonium chloride (N)
-0.1
+0.5
N.D.
-0.0
-0.2
pH
Minimal media pH9
-0.3
+0.3
N.D.
-0.0
+0.2
stress
Cobalt chloride 0.3125 mM
+0.1
-0.3
N.D.
+0.2
+0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
+0.3
N.D.
+0.2
-0.3
temperature
LB 10C
+0.3
-0.3
N.D.
+0.3
+0.2
carbon source
Tween 20 (C)
+0.3
+0.2
N.D.
+0.1
-0.2
denitrifying
Nitrate reduction, replicate A t2
+0.3
+0.2
N.D.
+0.3
-0.1
anaerobic
Nitrate reduction
-0.2
+0.7
N.D.
+0.1
+0.0
anaerobic
Nitrate reduction
+0.1
+0.7
N.D.
+0.2
+0.1
carbon source
carbon source Sucrose 1mM
+0.4
+0.3
N.D.
+0.4
+0.3
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