Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_2552 and Pf1N1B4_2553 are separated by 173 nucleotidesPf1N1B4_2553 and Pf1N1B4_2554 are separated by 184 nucleotidesPf1N1B4_2554 and Pf1N1B4_2555 are separated by 82 nucleotidesPf1N1B4_2555 and Pf1N1B4_2556 are separated by 50 nucleotides Pf1N1B4_2552 - OsmC/Ohr family protein, at 2,895,574 to 2,895,996 _2552 Pf1N1B4_2553 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 2,896,170 to 2,896,817 _2553 Pf1N1B4_2554 - Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17), at 2,897,002 to 2,897,340 _2554 Pf1N1B4_2555 - Oxidoreductase, short chain dehydrogenase/reductase family, at 2,897,423 to 2,898,223 _2555 Pf1N1B4_2556 - FIG00954311: hypothetical protein, at 2,898,274 to 2,899,251 _2556
Group Condition Pf1N1B4_2552 Pf1N1B4_2553 Pf1N1B4_2554 Pf1N1B4_2555 Pf1N1B4_2556
carbon source acetate (C) -0.0 N.D. -2.4 -0.2 -0.0
carbon source acetate (C) +0.0 N.D. -2.5 -0.1 +0.0
carbon source pyruvate (C) -1.3 N.D. -0.4 -0.1 -0.2
carbon source D-Glucose (C) -1.6 N.D. -0.0 -0.3 -0.1
carbon source L-Arabinose (C) -1.0 N.D. -0.7 -0.1 +0.0
stress Thallium(I) acetate 0.008 mg/ml -1.1 N.D. -0.1 -0.2 -0.3
stress sodium fluoride 12.5 mM -1.5 N.D. -0.0 -0.1 -0.1
nitrogen source Carnitine Hydrochloride (N) -0.6 N.D. -0.6 -0.2 -0.2
lb LB -1.0 N.D. -0.2 -0.0 -0.2
stress Thallium(I) acetate 0.008 mg/ml -0.8 N.D. -0.3 -0.1 -0.2
carbon source L-Lactate (C) -1.0 N.D. -0.4 -0.2 +0.2
carbon source carbon source Sucrose 5mM -1.6 N.D. -0.0 -0.3 +0.5
stress nitrite 10 mM -0.1 N.D. -0.5 -0.6 -0.3
denitrifying Nitrate reduction, replicate C -0.9 N.D. -0.2 -0.5 +0.2
stress Cisplatin 0.006 mg/ml -1.0 N.D. +0.1 -0.1 -0.3
lb LB -0.9 N.D. +0.0 -0.3 -0.2
stress Cisplatin 0.006 mg/ml -1.0 N.D. +0.2 -0.4 -0.1
carbon source L-Arabinose (C) -1.0 N.D. -0.2 +0.2 -0.2
carbon source octanoate (C) +0.3 N.D. -0.6 -0.7 -0.0
stress Sisomicin 0.001 mg/ml -0.9 N.D. +0.4 -0.4 -0.1
denitrifying Nitrate reduction, replicate B -0.9 N.D. +0.2 -0.3 +0.1
stress Doxycycline hyclate 0.0001 mg/ml +0.7 N.D. -0.5 -0.6 -0.1
carbon source carbon source Sucrose 5mM +0.5 N.D. -0.1 -0.5 -0.3
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.6 N.D. -0.4 -0.2 +0.5
nitrogen source Adenine (N) +0.6 N.D. -0.5 -0.1 +0.4
nitrogen source Uridine (N) +0.8 N.D. -0.7 +0.2 +0.2
nitrogen source Cytosine (N) +0.7 N.D. -0.3 -0.1 +0.3
carbon source carbon source Sucrose 0.25mM +0.3 N.D. +0.4 +0.3 -0.3
temperature LB 37C +0.1 N.D. +0.5 +0.3 +0.5
carbon source carbon source Sucrose 0.25mM +1.1 N.D. +0.1 +0.4 +0.1
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