Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_2494 and Pf1N1B4_2495 are separated by 84 nucleotidesPf1N1B4_2495 and Pf1N1B4_2496 are separated by 270 nucleotidesPf1N1B4_2496 and Pf1N1B4_2497 are separated by 403 nucleotidesPf1N1B4_2497 and Pf1N1B4_2498 are separated by 154 nucleotides Pf1N1B4_2494 - GGDEF domain protein, at 2,827,294 to 2,828,583 _2494 Pf1N1B4_2495 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 2,828,668 to 2,830,470 _2495 Pf1N1B4_2496 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 2,830,741 to 2,832,519 _2496 Pf1N1B4_2497 - Stress induced hydrophobic peptide, at 2,832,923 to 2,833,081 _2497 Pf1N1B4_2498 - Coenzyme PQQ synthesis protein F (EC 3.4.99.-), at 2,833,236 to 2,835,068 _2498
Group Condition Pf1N1B4_2494 Pf1N1B4_2495 Pf1N1B4_2496 Pf1N1B4_2497 Pf1N1B4_2498
carbon source octanoate (C) -0.0 +0.0 -3.2 +0.1 -0.3
carbon source Tween 20 (C) +0.2 -0.1 -2.3 -0.1 -0.4
carbon source butyrate (C) +0.2 +0.2 -2.8 -0.2 -0.1
carbon source carbon source Sucrose 1mM -0.4 -0.0 -0.6 -0.1 -0.1
carbon source carbon source Sucrose 0.5mM +0.0 -0.0 -0.7 +0.0 -0.1
nitrogen source nitrogen source nitrite 1mM +0.1 -0.0 +0.1 -0.1 -0.9
carbon source carbon source Sucrose 0.25mM +0.2 +0.1 -0.5 +0.2 -0.6
nitrogen source nitrogen source nitrate 5mM +0.1 -0.3 +0.1 +0.0 -0.6
stress nitrate 100 mM +0.1 -0.2 +0.1 -0.1 -0.5
carbon source carbon source Sucrose 0.25mM -0.2 -0.1 -0.6 +0.2 +0.3
nitrogen source L-Methionine (N) +0.2 -0.2 +0.1 -0.1 -0.5
nitrogen source L-Citrulline (N) +0.2 -0.1 +0.1 -0.4 -0.3
lb LB -0.3 -0.0 -0.2 +0.2 -0.2
carbon source carbon source Sucrose 1mM +0.3 -0.0 -0.8 +0.1 -0.1
nitrogen source nitrogen source nitrite 0.1mM +0.3 -0.2 +0.1 -0.1 -0.5
carbon source L-Isoleucine (C) +0.3 -0.2 +0.0 -0.3 -0.3
nitrogen source nitrogen source nitrite 0.1mM +0.1 +0.0 +0.2 -0.3 -0.4
stress Benzethonium chloride 0.0125 mM -0.4 -0.2 +0.2 +0.2 -0.3
stress Sisomicin 0.001 mg/ml +0.2 -0.2 +0.0 -0.5 +0.2
nitrogen source nitrogen source nitrite 0.5mM +0.2 -0.1 +0.1 +0.1 -0.5
stress Spectinomycin 0.05 mg/ml -0.3 +0.0 -0.2 -0.1 +0.3
denitrifying Nitrate reduction, replicate C t2 -0.3 +0.1 +0.4 -0.1 -0.2
carbon source L-Arabinose (C) -0.0 +0.2 +0.2 -0.3 -0.2
denitrifying Nitrate reduction, replicate C +0.2 -0.2 +0.1 -0.3 +0.2
temperature LB 37C +0.2 +0.2 +0.2 -0.4 -0.1
carbon source carbon source Sucrose 5mM +0.5 +0.1 +0.2 -0.2 -0.3
carbon source carbon source Sucrose 5mM -0.0 +0.2 +0.4 -0.0 -0.2
nitrogen source D-Glucosamine Hydrochloride (N) +0.2 -0.1 +0.3 -0.2 +0.2
carbon source D-Fructose (C) +0.3 -0.1 +0.2 +0.3 +0.3
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.6 +0.3 +0.2 -0.0 +0.5
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