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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_2442 and Pf1N1B4_2443 are separated by 188 nucleotides
Pf1N1B4_2443 and Pf1N1B4_2444 are separated by 1136 nucleotides
Pf1N1B4_2444 and Pf1N1B4_2445 are separated by 121 nucleotides
Pf1N1B4_2445 and Pf1N1B4_2446 are separated by 26 nucleotides
Pf1N1B4_2442 - Electron transfer flavoprotein, beta subunit, at 2,767,342 to 2,768,112
_2442
Pf1N1B4_2443 - acetyltransferase, GNAT family, at 2,768,301 to 2,768,867
_2443
Pf1N1B4_2444 - Cholesterol oxidase (EC 1.1.3.6), at 2,770,004 to 2,773,462
_2444
Pf1N1B4_2445 - FIG00506946: hypothetical protein, at 2,773,584 to 2,775,452
_2445
Pf1N1B4_2446 - miscellaneous; unknown, at 2,775,479 to 2,776,729
_2446
Group
Condition
Pf1N1B4
_2442
Pf1N1B4
_2443
Pf1N1B4
_2444
Pf1N1B4
_2445
Pf1N1B4
_2446
nitrogen source
nitrogen source nitrite 0.5mM
+0.3
+0.6
-1.5
-1.5
-1.5
stress
Chlorite 1 mM
-1.0
-0.5
+0.1
-0.3
-0.1
stress
Chloride 200 mM
+0.1
-0.7
+0.2
-0.5
-0.2
stress
Choline chloride 200 mM
-0.6
-0.6
-0.1
-0.1
+0.3
anaerobic
Nitrate reduction
-1.0
-0.2
+0.0
-0.0
+0.1
carbon source
carbon source Sucrose 0.5mM
-0.2
-0.6
-0.3
-0.1
+0.3
carbon source
carbon source Sucrose 1mM
-1.0
-0.2
-0.1
-0.0
+0.6
nitrogen source
Carnitine Hydrochloride (N)
-1.5
+0.4
+0.1
+0.2
+0.2
carbon source
Carnitine Hydrochloride (C)
-1.3
+0.2
+0.2
+0.3
+0.1
nitrogen source
nitrogen source nitrite 0.5mM
+0.5
+0.4
-0.5
-0.1
-0.8
pH
Minimal media pH9
-1.1
+0.4
+0.1
+0.2
+0.0
anaerobic
N2E2wt with N1B4m denitrifying repA
-0.8
+0.1
+0.1
+0.2
+0.1
nitrogen source
nitrogen source nitrite 0.1mM
+0.8
-0.1
-0.0
-0.6
-0.4
temperature
LB 37C
-0.5
-0.2
+0.2
-0.1
+0.4
carbon source
L-Arabinose (C)
-0.8
-0.0
+0.2
+0.4
+0.2
stress
Spectinomycin 0.05 mg/ml
+0.6
-0.3
+0.2
-0.1
-0.1
carbon source
L-Alanine (C)
+0.7
-0.1
+0.3
-0.3
-0.0
stress
D-Cycloserine 0.1 mg/ml
+1.2
-0.0
-0.0
-0.0
-0.2
carbon source
L-Arginine (C)
+0.9
+0.1
+0.1
+0.1
-0.2
nitrogen source
nitrogen source nitrite 1mM
+0.5
+0.4
+0.1
-0.1
+0.3
carbon source
D-Trehalose (C)
+0.9
-0.2
+0.1
+0.1
+0.2
stress
Fusidic 0.0625 mg/ml
+1.1
-0.1
+0.0
+0.3
-0.2
carbon source
D-Alanine (C)
+1.0
+0.2
+0.2
-0.2
-0.0
nitrogen source
D-Alanine (N)
+0.8
+0.4
+0.2
-0.0
-0.1
carbon source
Cytidine (C)
+0.9
+0.2
+0.2
+0.3
-0.2
nitrogen source
L-Methionine (N)
+0.7
+0.1
+0.3
+0.3
-0.1
carbon source
carbon source Sucrose 1mM
+0.5
+0.6
-0.0
+0.2
+0.1
stress
Fusidic 0.125 mg/ml
+0.8
-0.1
+0.1
+0.5
+0.2
carbon source
L-Isoleucine (C)
+1.1
+0.1
+0.2
-0.0
+0.1
carbon source
L-Asparagine (C)
+1.2
+0.1
+0.2
-0.1
+0.2
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