Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_2424 and Pf1N1B4_2425 overlap by 27 nucleotidesPf1N1B4_2425 and Pf1N1B4_2426 are separated by 114 nucleotidesPf1N1B4_2426 and Pf1N1B4_2427 are separated by 372 nucleotidesPf1N1B4_2427 and Pf1N1B4_2428 are separated by 13 nucleotides Pf1N1B4_2424 - hypothetical protein, at 2,750,428 to 2,750,544 _2424 Pf1N1B4_2425 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 2,750,518 to 2,751,621 _2425 Pf1N1B4_2426 - FIG00953780: hypothetical protein, at 2,751,736 to 2,751,999 _2426 Pf1N1B4_2427 - Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1), at 2,752,372 to 2,753,535 _2427 Pf1N1B4_2428 - FIG143042: Thioesterase-like protein, at 2,753,549 to 2,754,025 _2428
Group Condition Pf1N1B4_2424 Pf1N1B4_2425 Pf1N1B4_2426 Pf1N1B4_2427 Pf1N1B4_2428
carbon source Carnitine Hydrochloride (C) N.D. -3.1 +0.6 -0.2 -3.5
nitrogen source Carnitine Hydrochloride (N) N.D. -2.1 -0.2 +0.4 -3.4
stress Doxycycline hyclate 0.0001 mg/ml N.D. -0.2 -0.5 -1.0 -0.3
carbon source D-Gluconic Acid (C) N.D. -0.0 -0.2 -1.7 +0.2
denitrifying Nitrate reduction, replicate B t1 N.D. -0.1 -0.4 -0.7 -0.3
anaerobic N2E2wt with N1B4m denitrifying repA N.D. -0.3 +0.2 -1.0 -0.1
stress Chloride 200 mM N.D. -0.1 -0.1 -1.2 +0.1
stress Chloride 300 mM N.D. +0.3 +0.2 -1.5 -0.1
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 N.D. -0.4 -0.6 -0.5 +0.5
anaerobic N2E2wt with N1B4m denitrifying repB N.D. +0.2 -0.4 -0.8 +0.2
carbon source D-Galacturonic Acid (C) N.D. +0.3 -0.2 -0.6 -0.3
stress Sisomicin 0.001 mg/ml N.D. -0.2 +0.3 -0.8 -0.1
stress methylglyoxal 0.008 vol% N.D. +0.3 +0.5 -1.1 -0.2
carbon source L-Leucine (C) N.D. +0.6 +0.2 -1.2 -0.1
stress Cisplatin 0.006 mg/ml N.D. -0.3 -0.4 +0.6 -0.1
stress Fusidic 0.125 mg/ml N.D. +0.4 +0.3 -0.1 -0.4
nitrogen source nitrogen source nitrate 5mM N.D. +0.4 +0.5 -0.3 -0.3
stress benzoic 0.58 mg/ml N.D. +0.1 -0.5 +0.6 +0.2
carbon source carbon source Sucrose 0.25mM N.D. +0.6 +0.4 -0.4 -0.2
stress sodium fluoride 12.5 mM N.D. +0.3 -0.5 +0.3 +0.3
nitrogen source D-Glucosamine Hydrochloride (N) N.D. +0.6 -0.1 -0.6 +0.6
carbon source carbon source Sucrose 1mM N.D. +0.0 +0.2 +1.0 -0.7
nitrogen source Uridine (N) N.D. -0.4 +0.1 +0.8 +0.2
nitrogen source Ammonium chloride (N) N.D. -0.3 +0.1 +0.8 +0.2
nitrogen source Cytidine (N) N.D. -0.3 +0.3 +0.7 +0.2
nitrogen source Thymine (N) N.D. -0.1 +0.3 +0.7 +0.3
carbon source carbon source Sucrose 1mM N.D. +0.2 -0.3 +1.3 +0.2
carbon source carbon source Sucrose 5mM N.D. +0.1 +0.6 +0.8 -0.2
pH Minimal media pH9 N.D. +0.4 -0.0 +0.7 +0.3
nitrogen source Adenine (N) N.D. -0.1 +0.2 +0.9 +0.5
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Pf1N1B4_2424
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Pf1N1B4_2425
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Pf1N1B4_2427
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Pf1N1B4_2428
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