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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_2365 and Pf1N1B4_2366 overlap by 4 nucleotides
Pf1N1B4_2366 and Pf1N1B4_2367 overlap by 4 nucleotides
Pf1N1B4_2367 and Pf1N1B4_2368 are separated by 66 nucleotides
Pf1N1B4_2368 and Pf1N1B4_2369 are separated by 1 nucleotides
Pf1N1B4_2365 - Malonate decarboxylase gamma subunit, at 2,682,226 to 2,683,029
_2365
Pf1N1B4_2366 - Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-), at 2,683,026 to 2,683,643
_2366
Pf1N1B4_2367 - Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39), at 2,683,640 to 2,684,551
_2367
Pf1N1B4_2368 - Malonate transporter, MadL subunit, at 2,684,618 to 2,685,034
_2368
Pf1N1B4_2369 - Malonate transporter, MadM subunit, at 2,685,036 to 2,685,800
_2369
Group
Condition
Pf1N1B4
_2365
Pf1N1B4
_2366
Pf1N1B4
_2367
Pf1N1B4
_2368
Pf1N1B4
_2369
carbon source
D-Lactate (C)
-0.0
-1.2
-0.4
-0.4
-0.3
carbon source
carbon source Sucrose 5mM
+0.4
-0.4
-0.2
-1.2
-0.4
carbon source
Fumarate (C)
-0.3
-0.8
-0.2
-0.4
+0.1
carbon source
D-Fructose (C)
+0.1
-1.0
-0.1
-0.3
-0.1
carbon source
carbon source Sucrose 0.25mM
-0.3
-0.7
+0.6
+0.8
-1.7
stress
Rifampicin 0.004 mg/ml
-0.4
-0.6
+0.3
-0.4
-0.1
carbon source
D-Glucose (C)
-0.1
-0.1
-0.2
-1.1
+0.3
stress
copper (II) chloride 2.5 mM
-0.1
+0.3
-0.3
-1.0
+0.1
carbon source
pyruvate (C)
-0.1
-0.5
-0.2
-0.5
+0.4
stress
nitrate 100 mM
+0.2
-0.7
-0.1
-0.6
+0.3
stress
Cobalt chloride 0.3125 mM
-0.1
+0.6
-0.4
-0.6
-0.3
carbon source
carbon source Sucrose 5mM
-0.3
-1.1
-0.9
+1.2
+0.2
nitrogen source
nitrogen source nitrate 20mM
+0.1
-0.1
-0.6
+0.6
-0.7
carbon source
D-Glucose (C)
+0.1
-0.3
-0.2
-0.8
+0.6
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
+0.4
-0.9
+0.0
+0.4
-0.5
stress
methylglyoxal 0.004 vol%
-0.3
+0.4
+0.3
-0.3
-0.5
stress
Chloride 200 mM
+0.1
-0.9
+0.6
-0.2
+0.1
carbon source
carbon source Sucrose 0.25mM
-0.7
-0.4
+0.2
+0.4
+0.1
carbon source
carbon source Sucrose 1mM
+0.3
-0.7
-0.5
+0.1
+0.6
anaerobic
N2E2wt with N1B4m denitrifying repB
-0.3
+0.7
+0.2
-0.6
-0.1
nitrogen source
Uridine (N)
-0.3
+0.2
+0.1
-1.0
+0.8
denitrifying
Nitrate reduction, replicate A
+0.7
+0.1
+0.2
+0.1
-0.8
anaerobic
Nitrate reduction
+0.1
+1.3
+0.2
-0.9
-0.3
stress
Fusidic 0.125 mg/ml
-0.3
+0.6
-0.5
+0.3
+0.4
stress
Fusidic 0.0625 mg/ml
+0.1
+0.3
-0.4
-0.2
+0.8
anaerobic
Nitrate reduction
+0.2
-0.0
+0.6
+0.4
-0.5
nitrogen source
nitrogen source nitrite 1mM
+0.2
+0.0
-0.5
+0.6
+0.6
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
+0.4
+0.4
+0.6
+0.2
-0.6
anaerobic
Nitrate reduction
-0.0
+1.0
+0.7
-0.0
-0.6
stress
Cisplatin 0.006 mg/ml
+0.4
+0.0
+0.3
+0.5
+0.6
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