Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_2225 and Pf1N1B4_2226 are separated by 294 nucleotidesPf1N1B4_2226 and Pf1N1B4_2227 overlap by 4 nucleotidesPf1N1B4_2227 and Pf1N1B4_2228 are separated by 126 nucleotidesPf1N1B4_2228 and Pf1N1B4_2229 are separated by 27 nucleotides Pf1N1B4_2225 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 2,537,856 to 2,538,461 _2225 Pf1N1B4_2226 - Z-ring-associated protein ZapA, at 2,538,756 to 2,539,073 _2226 Pf1N1B4_2227 - FIG019278: hypothetical protein, at 2,539,070 to 2,539,279 _2227 Pf1N1B4_2228 - FIG001590: Putative conserved exported protein precursor, at 2,539,406 to 2,539,960 _2228 Pf1N1B4_2229 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 2,539,988 to 2,541,322 _2229
Group Condition Pf1N1B4_2225 Pf1N1B4_2226 Pf1N1B4_2227 Pf1N1B4_2228 Pf1N1B4_2229
carbon source carbon source Sucrose 1mM -0.8 N.D. -3.1 -0.6 -0.0
carbon source carbon source Sucrose 5mM -0.8 N.D. -2.2 -1.0 -0.0
nitrogen source nitrogen source nitrite 1mM -1.6 N.D. -0.7 -1.2 -0.1
carbon source D-Mannose (C) -2.5 N.D. +0.1 -0.9 -0.0
nitrogen source Carnitine Hydrochloride (N) -2.2 N.D. -1.2 +0.1 +0.1
carbon source L-Histidine (C) -2.6 N.D. -0.3 -0.1 -0.1
nitrogen source nitrogen source nitrite 1mM -1.3 N.D. -1.5 -0.4 +0.0
carbon source L-Arginine (C) -1.5 N.D. -1.2 -0.2 -0.1
denitrifying Nitrate reduction, replicate B -1.3 N.D. -0.7 -0.5 -0.6
stress Doxycycline hyclate 0.0001 mg/ml +0.4 N.D. -2.3 -1.4 +0.2
carbon source Glycerol (C) -1.7 N.D. -0.4 -0.6 -0.1
carbon source D-Alanine (C) -1.7 N.D. +0.1 -0.9 -0.3
carbon source butyrate (C) -2.5 N.D. -0.4 -0.2 +0.3
carbon source Putrescine (C) -2.4 N.D. +0.1 -0.3 -0.1
carbon source Tween 20 (C) -2.2 N.D. -0.1 -0.4 +0.1
carbon source D-Lactate (C) -0.8 N.D. +0.2 -1.6 -0.1
carbon source D-Lactate (C) -1.0 N.D. +0.9 -1.1 -0.3
pH Minimal media pH9 -0.5 N.D. -2.1 +0.4 +0.8
nitrogen source nitrogen source nitrite 0.5mM -1.0 N.D. +0.7 -1.0 +0.1
nitrogen source Ammonium chloride (N) -2.0 N.D. +0.6 +0.3 -0.0
denitrifying Nitrate reduction, replicate C -1.3 N.D. +0.9 -0.3 -0.4
carbon source octanoate (C) -0.3 N.D. -2.0 +0.5 +1.0
nitrogen source nitrate (N) -1.9 N.D. +0.8 +0.3 +0.1
pH Minimal media pH9 -0.8 N.D. -1.2 +0.7 +0.8
carbon source carbon source Sucrose 0.5mM -0.9 N.D. +1.2 -0.4 -0.3
carbon source L-Arabinose (C) -1.6 N.D. +0.6 +0.5 +0.3
denitrifying Nitrate reduction, replicate A t2 -1.0 N.D. +1.6 -0.2 -0.5
nitrogen source Cytidine (N) -0.9 N.D. -0.4 +0.7 +0.7
nitrogen source Uridine (N) -1.2 N.D. +0.6 +0.7 +0.2
denitrifying Nitrate reduction, replicate A t1 -0.8 N.D. +1.1 +0.6 -0.3
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