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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_2216 and Pf1N1B4_2217 are separated by 141 nucleotides
Pf1N1B4_2217 and Pf1N1B4_2218 overlap by 1 nucleotides
Pf1N1B4_2218 and Pf1N1B4_2219 are separated by 210 nucleotides
Pf1N1B4_2219 and Pf1N1B4_2220 overlap by 25 nucleotides
Pf1N1B4_2216 - Transcription termination factor Rho, at 2,529,100 to 2,530,359
_2216
Pf1N1B4_2217 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-), at 2,530,501 to 2,531,967
_2217
Pf1N1B4_2218 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 2,531,967 to 2,532,935
_2218
Pf1N1B4_2219 - ChaC-related protein, at 2,533,146 to 2,533,814
_2219
Pf1N1B4_2220 - Glycerol-3-phosphate transporter, at 2,533,790 to 2,535,139
_2220
Group
Condition
Pf1N1B4
_2216
Pf1N1B4
_2217
Pf1N1B4
_2218
Pf1N1B4
_2219
Pf1N1B4
_2220
stress
Paraquat dichloride 0.016 mg/mL
N.D.
N.D.
-1.5
-0.4
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
N.D.
-1.1
-0.4
-0.4
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
N.D.
-0.9
-0.0
-0.3
carbon source
D-Lactate (C)
N.D.
N.D.
-0.6
-0.5
-0.1
nitrogen source
nitrogen source nitrate 20mM
N.D.
N.D.
-0.1
-0.4
-0.4
pH
Minimal media pH9
N.D.
N.D.
-0.8
-0.2
+0.1
stress
Cephalothin 2.5 mg/ml
N.D.
N.D.
-0.1
-0.7
+0.0
carbon source
pyruvate (C)
N.D.
N.D.
-0.7
+0.1
-0.1
carbon source
L-Arginine (C)
N.D.
N.D.
-0.5
-0.2
+0.1
carbon source
D-Lactate (C)
N.D.
N.D.
-0.7
-0.1
+0.2
carbon source
D,L-Lactate (C)
N.D.
N.D.
-0.4
+0.1
-0.3
carbon source
carbon source Sucrose 0.5mM
N.D.
N.D.
+0.2
-0.7
-0.0
stress
Rifampicin 0.004 mg/ml
N.D.
N.D.
-0.2
-0.4
+0.2
stress
Fusidic 0.125 mg/ml
N.D.
N.D.
+0.7
-0.3
-0.6
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
+0.4
-0.3
-0.1
nitrogen source
L-Methionine (N)
N.D.
N.D.
+0.6
-0.5
-0.1
carbon source
carbon source Sucrose 0.25mM
N.D.
N.D.
-0.4
+0.2
+0.3
stress
Benzethonium chloride 0.0125 mM
N.D.
N.D.
-0.2
-0.2
+0.6
stress
Fusidic 0.0625 mg/ml
N.D.
N.D.
+0.5
-0.2
-0.1
stress
benzoic 0.58 mg/ml
N.D.
N.D.
+0.2
-0.2
+0.4
stress
Nalidixic 0.004 mg/ml
N.D.
N.D.
+0.4
+0.1
-0.2
stress
Spectinomycin 0.05 mg/ml
N.D.
N.D.
+0.1
-0.1
+0.5
stress
Carbenicillin 2 mg/ml
N.D.
N.D.
+1.0
-0.1
-0.5
stress
Choline Lysine 6 mM
N.D.
N.D.
+0.5
+0.2
-0.2
stress
Doxycycline hyclate 0.0001 mg/ml
N.D.
N.D.
+0.0
+0.7
-0.0
lb
LB
N.D.
N.D.
+0.6
+0.2
-0.1
stress
1-ethyl-3-methylimidazolium chloride 80 mM
N.D.
N.D.
+0.5
+0.3
-0.1
stress
Gentamicin 0.001 mg/ml
N.D.
N.D.
+0.8
+0.4
+0.0
stress
nitrate 100 mM
N.D.
N.D.
+0.7
+0.4
+0.1
stress
Sisomicin 0.001 mg/ml
N.D.
N.D.
+1.0
+0.3
+0.3
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