Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_2111 and Pf1N1B4_2112 are separated by 57 nucleotidesPf1N1B4_2112 and Pf1N1B4_2113 are separated by 24 nucleotidesPf1N1B4_2113 and Pf1N1B4_2114 are separated by 57 nucleotidesPf1N1B4_2114 and Pf1N1B4_2115 are separated by 167 nucleotides Pf1N1B4_2111 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 2,423,724 to 2,424,464 _2111 Pf1N1B4_2112 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 2,424,522 to 2,424,902 _2112 Pf1N1B4_2113 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 2,424,927 to 2,427,032 _2113 Pf1N1B4_2114 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 2,427,090 to 2,427,353 _2114 Pf1N1B4_2115 - Guanylate kinase (EC 2.7.4.8), at 2,427,521 to 2,428,141 _2115
Group Condition Pf1N1B4_2111 Pf1N1B4_2112 Pf1N1B4_2113 Pf1N1B4_2114 Pf1N1B4_2115
carbon source octanoate (C) -1.3 -2.6 N.D. -2.9 N.D.
carbon source carbon source Sucrose 1mM +0.3 -4.0 N.D. -1.2 N.D.
carbon source carbon source Sucrose 5mM -0.1 -2.6 N.D. -2.0 N.D.
carbon source carbon source Sucrose 20mM -0.1 -3.2 N.D. -1.3 N.D.
carbon source carbon source Sucrose 1mM +0.4 -4.0 N.D. -0.9 N.D.
carbon source carbon source Sucrose 20mM -0.0 -2.8 N.D. -1.7 N.D.
nitrogen source L-Glutamic (N) -0.1 -3.2 N.D. -1.2 N.D.
carbon source carbon source Sucrose 0.25mM +0.2 -4.1 N.D. -0.5 N.D.
nitrogen source Putrescine (N) -0.1 -3.3 N.D. -1.0 N.D.
nitrogen source nitrogen source Ammonium chloride 20mM -0.2 -3.6 N.D. -0.6 N.D.
carbon source D-Trehalose (C) +0.2 -2.9 N.D. -1.6 N.D.
carbon source carbon source Sucrose 5mM +0.0 -2.8 N.D. -1.4 N.D.
carbon source carbon source Sucrose 0.25mM +0.1 -3.4 N.D. -0.9 N.D.
nitrogen source L-Arginine (N) +0.1 -3.4 N.D. -0.7 N.D.
nitrogen source nitrogen source Ammonium chloride 20mM -0.1 -3.2 N.D. -0.7 N.D.
nitrogen source L-Histidine (N) +0.1 -3.6 N.D. -0.4 N.D.
nitrogen source nitrogen source nitrate 20mM -0.2 -3.1 N.D. -0.5 N.D.
nitrogen source L-Serine (N) +0.1 -3.7 N.D. -0.1 N.D.
carbon source L-Malic (C) +0.1 -3.0 N.D. -0.8 N.D.
carbon source L-Glutamine (C) +0.1 -3.1 N.D. -0.6 N.D.
carbon source L-Glutamic (C) +0.2 -3.3 N.D. -0.6 N.D.
pH Minimal media pH7 +0.2 -3.5 N.D. -0.2 N.D.
carbon source L-Histidine (C) +0.2 -3.3 N.D. +0.7 N.D.
carbon source D-Mannose (C) +0.1 -2.9 N.D. +0.8 N.D.
denitrifying Nitrate reduction, replicate C +0.2 -2.8 N.D. +1.1 N.D.
carbon source Carnitine Hydrochloride (C) +0.3 -3.0 N.D. +1.8 N.D.
carbon source D-Lactate (C) +0.1 -2.0 N.D. +1.6 N.D.
carbon source D-Lactate (C) +0.2 -2.1 N.D. +1.7 N.D.
pH Minimal media pH9 +0.5 -2.1 N.D. +2.3 N.D.
pH Minimal media pH9 +0.5 -1.8 N.D. +2.1 N.D.
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