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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_209 and Pf1N1B4_210 are separated by 141 nucleotides
Pf1N1B4_210 and Pf1N1B4_211 overlap by 1 nucleotides
Pf1N1B4_211 and Pf1N1B4_212 overlap by 25 nucleotides
Pf1N1B4_212 and Pf1N1B4_213 are separated by 122 nucleotides
Pf1N1B4_209 - TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN, at 256,833 to 257,780
_209
Pf1N1B4_210 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 257,922 to 259,661
_210
Pf1N1B4_211 - Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase, at 259,661 to 260,527
_211
Pf1N1B4_212 - Thiol:disulfide interchange protein DsbG precursor, at 260,503 to 261,270
_212
Pf1N1B4_213 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 261,393 to 262,205
_213
Group
Condition
Pf1N1B4
_209
Pf1N1B4
_210
Pf1N1B4
_211
Pf1N1B4
_212
Pf1N1B4
_213
stress
copper (II) chloride 2.5 mM
+0.1
-0.7
-1.2
-0.2
+0.1
nitrogen source
nitrate (N)
-0.2
-0.6
-0.9
-0.3
+0.2
stress
copper (II) chloride 2.5 mM
+0.2
-0.9
-1.1
+0.1
-0.1
nitrogen source
Ammonium chloride (N)
-0.1
-0.5
-0.8
-0.1
+0.3
nitrogen source
Adenine (N)
+0.2
-0.3
-0.6
-0.2
+0.1
nitrogen source
nitrogen source nitrite 0.1mM
-0.1
+0.3
-0.1
+0.2
-1.1
stress
1-ethyl-3-methylimidazolium chloride 80 mM
-0.0
+0.0
+0.4
-0.2
-0.6
temperature
LB 10C
-0.2
+0.3
+0.2
+0.1
-0.7
carbon source
carbon source Sucrose 1mM
+0.1
+0.2
+0.6
-0.5
-0.7
stress
Thallium(I) acetate 0.008 mg/ml
-0.3
+0.1
-0.4
+0.5
-0.1
temperature
LB 37C
-0.2
+0.5
+0.4
-0.9
-0.0
carbon source
carbon source Sucrose 0.5mM
+0.1
+0.2
+0.5
-0.0
-1.0
stress
Cisplatin 0.006 mg/ml
-0.2
+0.1
+0.4
+0.2
-0.5
nitrogen source
nitrogen source nitrite 0.5mM
+0.4
+0.1
-0.2
+0.1
-0.5
carbon source
octanoate (C)
+0.2
+0.0
-0.7
+0.4
+0.2
carbon source
carbon source Sucrose 0.25mM
+0.2
+0.5
+0.4
-0.5
-0.4
stress
D-Cycloserine 0.1 mg/ml
+0.2
+0.1
+0.4
+0.2
-0.3
carbon source
L-Isoleucine (C)
+0.2
+0.3
+0.5
-0.4
-0.0
carbon source
m-Inositol (C)
+0.2
+0.2
+0.5
+0.1
-0.4
stress
Aluminum chloride 2.5 mM
+0.0
+0.4
+0.7
-0.1
-0.4
carbon source
carbon source Sucrose 1mM
-0.4
+0.3
+0.5
+0.3
+0.1
stress
Sisomicin 0.001 mg/ml
+0.2
+0.3
+0.7
-0.1
-0.1
carbon source
carbon source Sucrose 0.25mM
+0.4
+0.5
+0.7
-0.3
-0.1
stress
Fusidic 0.125 mg/ml
+0.3
+0.4
+0.7
-0.2
-0.0
stress
Choline Lysine 6 mM
-0.1
+0.1
+1.1
+0.1
+0.1
nitrogen source
L-Methionine (N)
+0.1
+0.3
+0.8
+0.1
-0.0
stress
Fusidic 0.0625 mg/ml
+0.4
+0.6
+0.6
-0.1
-0.2
stress
Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.4
+0.5
+0.3
+0.4
stress
nitrate 100 mM
+0.1
+0.3
+1.3
+0.1
-0.1
nitrogen source
D-Alanine (N)
+0.0
+0.5
+1.2
-0.1
+0.3
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