Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_205 and Pf1N1B4_206 are separated by 143 nucleotidesPf1N1B4_206 and Pf1N1B4_207 are separated by 153 nucleotidesPf1N1B4_207 and Pf1N1B4_208 overlap by 4 nucleotidesPf1N1B4_208 and Pf1N1B4_209 are separated by 1233 nucleotides Pf1N1B4_205 - Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76), at 251,402 to 252,814 _205 Pf1N1B4_206 - hypothetical protein, at 252,958 to 253,443 _206 Pf1N1B4_207 - Sensor histidine kinase, at 253,597 to 254,922 _207 Pf1N1B4_208 - Two-component system response regulator QseB, at 254,919 to 255,599 _208 Pf1N1B4_209 - TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN, at 256,833 to 257,780 _209
Group Condition Pf1N1B4_205 Pf1N1B4_206 Pf1N1B4_207 Pf1N1B4_208 Pf1N1B4_209
denitrifying Nitrate reduction, replicate B -0.6 -0.3 N.D. -0.5 -0.3
stress Chloride 200 mM -1.6 +0.1 N.D. -0.4 +0.3
carbon source carbon source Sucrose 5mM -0.1 -0.0 N.D. -1.3 -0.2
nophagecontrol TIme6-nophage -0.5 -0.4 N.D. -0.6 -0.1
stress copper (II) chloride 2.5 mM +0.1 -0.0 N.D. -1.5 +0.1
carbon source carbon source Sucrose 0.5mM +0.3 -0.5 N.D. -1.2 +0.1
carbon source carbon source Sucrose 1mM -0.8 -0.4 N.D. -0.1 +0.1
stress copper (II) chloride 2.5 mM +0.2 +0.2 N.D. -1.8 +0.2
temperature LB 37C +0.0 -1.1 N.D. +0.2 -0.2
carbon source D-Galactose (C) +0.2 -0.6 N.D. -0.8 +0.2
pH Minimal media pH9 +0.2 +0.2 N.D. -1.2 -0.1
anaerobic Nitrate reduction +0.4 -0.9 N.D. -0.3 +0.0
anaerobic N2E2wt with N1B4m denitrifying repA +0.1 +0.4 N.D. -1.3 +0.2
carbon source D-Glucose (C) +0.5 -0.3 N.D. -0.8 +0.1
nitrogen source Cytidine (N) -0.8 +0.6 N.D. +0.0 +0.0
carbon source carbon source Sucrose 0.25mM +0.3 +0.5 N.D. -1.2 +0.4
denitrifying Nitrate reduction, replicate C +1.0 -0.6 N.D. -0.0 -0.4
carbon source carbon source Sucrose 1mM -0.4 +0.6 N.D. +0.6 -0.4
anaerobic Nitrate reduction +0.4 +0.6 N.D. -0.5 -0.0
carbon source D-Mannose (C) +0.6 +0.2 N.D. -0.7 +0.3
stress Dimethyl Sulfoxide 6.5 vol% +0.6 +0.2 N.D. -0.6 +0.2
carbon source Cytidine (C) +0.5 +0.5 N.D. -0.6 +0.1
nitrogen source nitrogen source nitrite 0.5mM +0.4 -0.4 N.D. +0.3 +0.4
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A +0.8 +0.3 N.D. -0.3 -0.1
carbon source L-Alanine (C) +0.5 +0.3 N.D. -0.3 +0.4
stress Dimethyl Sulfoxide 5 vol% +0.7 +0.4 N.D. -0.4 +0.3
carbon source Glycerol (C) +0.5 +0.5 N.D. -0.1 +0.3
carbon source m-Inositol (C) +0.7 +0.4 N.D. -0.1 +0.2
nitrogen source nitrogen source nitrite 0.1mM +0.8 +0.4 N.D. +0.1 -0.1
carbon source octanoate (C) +0.8 +0.8 N.D. +0.3 +0.2
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