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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_2033 and Pf1N1B4_2034 are separated by 239 nucleotides
Pf1N1B4_2034 and Pf1N1B4_2035 are separated by 234 nucleotides
Pf1N1B4_2035 and Pf1N1B4_2036 are separated by 15 nucleotides
Pf1N1B4_2036 and Pf1N1B4_2037 are separated by 178 nucleotides
Pf1N1B4_2033 - L-Proline/Glycine betaine transporter ProP, at 2,319,273 to 2,320,571
_2033
Pf1N1B4_2034 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 2,320,811 to 2,321,809
_2034
Pf1N1B4_2035 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 2,322,044 to 2,324,332
_2035
Pf1N1B4_2036 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 2,324,348 to 2,326,018
_2036
Pf1N1B4_2037 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 2,326,197 to 2,327,030
_2037
Group
Condition
Pf1N1B4
_2033
Pf1N1B4
_2034
Pf1N1B4
_2035
Pf1N1B4
_2036
Pf1N1B4
_2037
temperature
LB 10C
-0.1
N.D.
-1.2
-1.3
-2.8
carbon source
octanoate (C)
-0.1
N.D.
-2.3
-0.8
-2.0
stress
Bacitracin 2 mg/ml
+0.1
N.D.
-1.5
-0.3
-2.5
stress
Nalidixic 0.004 mg/ml
-0.3
N.D.
-1.8
-0.5
-1.6
temperature
LB 10C
-0.1
N.D.
-0.9
-1.3
-1.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
N.D.
-0.7
-1.1
-1.4
carbon source
L-Glutamic (C)
-0.1
N.D.
-0.6
-1.4
-0.8
stress
Sisomicin 0.001 mg/ml
-0.1
N.D.
-0.9
-0.2
-1.7
carbon source
carbon source Sucrose 5mM
-0.1
N.D.
-0.7
-1.7
-0.2
stress
Spectinomycin 0.05 mg/ml
+0.3
N.D.
-0.6
-0.2
-2.1
nitrogen source
nitrogen source nitrite 0.5mM
+0.2
N.D.
-0.7
-0.9
-1.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
N.D.
-0.6
-0.6
-1.5
pH
Minimal media pH7
-0.1
N.D.
-0.5
-0.5
-1.4
temperature
LB 20C
+0.0
N.D.
-1.2
-0.9
-0.5
temperature
LB 20C
-0.1
N.D.
-0.9
-0.4
-1.1
denitrifying
Nitrate reduction, replicate A
-0.1
N.D.
-0.3
-1.2
-0.8
stress
Rifampicin 0.004 mg/ml
+0.1
N.D.
-1.3
+0.2
-1.4
stress
Cisplatin 0.006 mg/ml
+0.1
N.D.
-0.6
-0.4
-1.5
stress
Cisplatin 0.006 mg/ml
+0.1
N.D.
-0.9
-0.7
-0.9
nitrogen source
Cytosine (N)
-0.0
N.D.
-0.5
-1.0
-0.9
denitrifying
Nitrate reduction, replicate B t1
-0.2
N.D.
-0.1
-1.8
-0.2
stress
methylglyoxal 0.008 vol%
-0.2
N.D.
-1.2
+0.3
-1.2
stress
nitrite 10 mM
-0.1
N.D.
-0.9
-0.8
-0.5
stress
methylglyoxal 0.004 vol%
-0.2
N.D.
-0.9
-0.4
-0.8
stress
Spectinomycin 0.025 mg/ml
+0.3
N.D.
-0.5
-0.5
-1.5
lb
LB
+0.2
N.D.
-0.6
-1.1
-0.6
stress
Fusidic 0.0625 mg/ml
-0.0
N.D.
-0.8
+0.5
-1.4
stress
Doxycycline hyclate 0.0001 mg/ml
-0.1
N.D.
-1.0
+0.4
-0.8
stress
Paraquat dichloride 0.016 mg/mL
+0.2
N.D.
+0.5
+1.2
+0.6
carbon source
carbon source Sucrose 0.25mM
+0.2
N.D.
+1.0
+1.0
+0.3
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