Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_1889 and Pf1N1B4_1890 are separated by 119 nucleotidesPf1N1B4_1890 and Pf1N1B4_1891 overlap by 4 nucleotidesPf1N1B4_1891 and Pf1N1B4_1892 are separated by 1 nucleotidesPf1N1B4_1892 and Pf1N1B4_1893 overlap by 4 nucleotides Pf1N1B4_1889 - Fused spore maturation proteins A and B, at 2,161,622 to 2,162,851 _1889 Pf1N1B4_1890 - Membrane lipoprotein lipid attachment site containing protein USSDB6D, at 2,162,971 to 2,163,597 _1890 Pf1N1B4_1891 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 2,163,594 to 2,164,532 _1891 Pf1N1B4_1892 - ABC transporter ATP-binding protein USSDB6B, at 2,164,534 to 2,165,337 _1892 Pf1N1B4_1893 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 2,165,334 to 2,166,467 _1893
Group Condition Pf1N1B4_1889 Pf1N1B4_1890 Pf1N1B4_1891 Pf1N1B4_1892 Pf1N1B4_1893
carbon source acetate (C) -3.1 -0.8 -0.4 -0.0 -0.1
stress Benzethonium chloride 0.0125 mM -1.2 -0.3 -0.6 -0.8 -1.2
carbon source acetate (C) -3.1 -0.3 +0.6 -0.2 -0.3
stress Carbenicillin 2 mg/ml -4.1 -0.1 +1.1 -0.3 +0.2
stress Doxycycline hyclate 0.0001 mg/ml -1.4 +0.2 -1.3 -1.1 +0.5
carbon source octanoate (C) -3.0 -0.1 +0.3 -0.0 +0.2
temperature LB 37C +0.3 -0.4 -2.9 +0.4 +0.1
stress Rifampicin 0.004 mg/ml -1.9 -0.2 +0.6 -0.5 +0.1
stress Chlorite 1 mM -0.2 +0.4 -1.1 -0.5 -0.1
nitrogen source nitrogen source nitrite 0.5mM +0.3 +0.3 -0.6 -0.9 -0.4
stress Cisplatin 0.006 mg/ml +0.1 +0.2 -0.6 -0.9 +0.2
carbon source a-Ketoglutaric (C) -0.1 +0.1 -0.8 +0.5 -0.7
lb LB -0.2 +0.1 -0.1 -0.9 +0.9
carbon source L-Leucine (C) +0.7 -0.5 -0.2 +0.3 -0.4
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.6 -0.8 -0.2 +0.6 -0.3
stress Cisplatin 0.006 mg/ml -0.1 -0.6 +0.3 -0.5 +0.8
carbon source L-Arginine (C) +0.5 -0.2 -0.7 +0.6 -0.1
nitrogen source nitrogen source nitrate 5mM +0.3 +0.2 -1.0 +0.3 +0.3
stress Choline Lysine 6 mM +1.1 -0.1 -0.6 -0.2 -0.0
temperature LB 37C +0.4 +0.2 +1.2 -1.3 +0.1
nitrogen source D-Glucosamine Hydrochloride (N) +0.1 -0.3 +1.3 -0.3 +0.1
carbon source carbon source Sucrose 0.25mM +1.5 +0.8 -1.1 +0.0 -0.2
nitrogen source nitrogen source nitrate 20mM +0.5 +0.9 -0.6 +0.6 -0.4
stress Aluminum chloride 2.5 mM +0.7 +0.1 +0.1 +1.0 -0.9
anaerobic Nitrate reduction -0.0 +0.4 +1.2 -0.5 +0.1
nitrogen source nitrogen source nitrate 5mM +0.7 +0.5 +0.6 +0.2 -0.4
carbon source carbon source Sucrose 0.25mM +1.6 +0.6 -0.6 +0.2 +0.0
carbon source carbon source Sucrose 0.5mM +3.0 +0.5 -0.7 +0.2 -0.5
carbon source carbon source Sucrose 1mM +3.2 -0.4 -0.9 +1.0 +0.1
carbon source carbon source Sucrose 1mM +3.5 +0.6 -1.1 +0.6 +0.6
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